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https://issues.apache.org/jira/browse/BEAM-5628?focusedWorklogId=563736&page=com.atlassian.jira.plugin.system.issuetabpanels:worklog-tabpanel#worklog-563736
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ASF GitHub Bot logged work on BEAM-5628:
----------------------------------------
Author: ASF GitHub Bot
Created on: 10/Mar/21 13:34
Start Date: 10/Mar/21 13:34
Worklog Time Spent: 10m
Work Description: codecov[bot] commented on pull request #14185:
URL: https://github.com/apache/beam/pull/14185#issuecomment-795419914
# [Codecov](https://codecov.io/gh/apache/beam/pull/14185?src=pr&el=h1) Report
> Merging
[#14185](https://codecov.io/gh/apache/beam/pull/14185?src=pr&el=desc) (a9f6c5f)
into
[master](https://codecov.io/gh/apache/beam/commit/ae5e1a31085302afcba8971db50d3bc554bcd2e2?el=desc)
(ae5e1a3) will **increase** coverage by `0.16%`.
> The diff coverage is `n/a`.
[](https://codecov.io/gh/apache/beam/pull/14185?src=pr&el=tree)
```diff
@@ Coverage Diff @@
## master #14185 +/- ##
==========================================
+ Coverage 83.13% 83.29% +0.16%
==========================================
Files 469 468 -1
Lines 58880 58687 -193
==========================================
- Hits 48947 48884 -63
+ Misses 9933 9803 -130
```
| [Impacted
Files](https://codecov.io/gh/apache/beam/pull/14185?src=pr&el=tree) | Coverage
Δ | |
|---|---|---|
|
[...hon/apache\_beam/runners/direct/direct\_userstate.py](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree#diff-YmVhbV9QcmVDb21taXRfUHl0aG9uX0Nyb24vc3JjL3Nka3MvcHl0aG9uL3Rlc3Qtc3VpdGVzL3RveC9weTM4L2J1aWxkL3NyY3Mvc2Rrcy9weXRob24vYXBhY2hlX2JlYW0vcnVubmVycy9kaXJlY3QvZGlyZWN0X3VzZXJzdGF0ZS5weQ==)
| | |
|
[.../srcs/sdks/python/apache\_beam/typehints/opcodes.py](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree#diff-YmVhbV9QcmVDb21taXRfUHl0aG9uX0Nyb24vc3JjL3Nka3MvcHl0aG9uL3Rlc3Qtc3VpdGVzL3RveC9weTM4L2J1aWxkL3NyY3Mvc2Rrcy9weXRob24vYXBhY2hlX2JlYW0vdHlwZWhpbnRzL29wY29kZXMucHk=)
| | |
|
[...srcs/sdks/python/apache\_beam/coders/avro\_record.py](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree#diff-YmVhbV9QcmVDb21taXRfUHl0aG9uX0Nyb24vc3JjL3Nka3MvcHl0aG9uL3Rlc3Qtc3VpdGVzL3RveC9weTM4L2J1aWxkL3NyY3Mvc2Rrcy9weXRob24vYXBhY2hlX2JlYW0vY29kZXJzL2F2cm9fcmVjb3JkLnB5)
| | |
|
[...sdks/python/apache\_beam/ml/gcp/visionml\_test\_it.py](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree#diff-YmVhbV9QcmVDb21taXRfUHl0aG9uX0Nyb24vc3JjL3Nka3MvcHl0aG9uL3Rlc3Qtc3VpdGVzL3RveC9weTM4L2J1aWxkL3NyY3Mvc2Rrcy9weXRob24vYXBhY2hlX2JlYW0vbWwvZ2NwL3Zpc2lvbm1sX3Rlc3RfaXQucHk=)
| | |
|
[...amples/snippets/transforms/elementwise/\_\_init\_\_.py](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree#diff-YmVhbV9QcmVDb21taXRfUHl0aG9uX0Nyb24vc3JjL3Nka3MvcHl0aG9uL3Rlc3Qtc3VpdGVzL3RveC9weTM4L2J1aWxkL3NyY3Mvc2Rrcy9weXRob24vYXBhY2hlX2JlYW0vZXhhbXBsZXMvc25pcHBldHMvdHJhbnNmb3Jtcy9lbGVtZW50d2lzZS9fX2luaXRfXy5weQ==)
| | |
|
[...rcs/sdks/python/apache\_beam/testing/test\_stream.py](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree#diff-YmVhbV9QcmVDb21taXRfUHl0aG9uX0Nyb24vc3JjL3Nka3MvcHl0aG9uL3Rlc3Qtc3VpdGVzL3RveC9weTM4L2J1aWxkL3NyY3Mvc2Rrcy9weXRob24vYXBhY2hlX2JlYW0vdGVzdGluZy90ZXN0X3N0cmVhbS5weQ==)
| | |
|
[.../python/apache\_beam/testing/test\_stream\_service.py](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree#diff-YmVhbV9QcmVDb21taXRfUHl0aG9uX0Nyb24vc3JjL3Nka3MvcHl0aG9uL3Rlc3Qtc3VpdGVzL3RveC9weTM4L2J1aWxkL3NyY3Mvc2Rrcy9weXRob24vYXBhY2hlX2JlYW0vdGVzdGluZy90ZXN0X3N0cmVhbV9zZXJ2aWNlLnB5)
| | |
|
[...ache\_beam/runners/interactive/pipeline\_fragment.py](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree#diff-YmVhbV9QcmVDb21taXRfUHl0aG9uX0Nyb24vc3JjL3Nka3MvcHl0aG9uL3Rlc3Qtc3VpdGVzL3RveC9weTM4L2J1aWxkL3NyY3Mvc2Rrcy9weXRob24vYXBhY2hlX2JlYW0vcnVubmVycy9pbnRlcmFjdGl2ZS9waXBlbGluZV9mcmFnbWVudC5weQ==)
| | |
|
[...hon/apache\_beam/runners/direct/test\_stream\_impl.py](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree#diff-YmVhbV9QcmVDb21taXRfUHl0aG9uX0Nyb24vc3JjL3Nka3MvcHl0aG9uL3Rlc3Qtc3VpdGVzL3RveC9weTM4L2J1aWxkL3NyY3Mvc2Rrcy9weXRob24vYXBhY2hlX2JlYW0vcnVubmVycy9kaXJlY3QvdGVzdF9zdHJlYW1faW1wbC5weQ==)
| | |
|
[...eam/runners/interactive/options/capture\_control.py](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree#diff-YmVhbV9QcmVDb21taXRfUHl0aG9uX0Nyb24vc3JjL3Nka3MvcHl0aG9uL3Rlc3Qtc3VpdGVzL3RveC9weTM4L2J1aWxkL3NyY3Mvc2Rrcy9weXRob24vYXBhY2hlX2JlYW0vcnVubmVycy9pbnRlcmFjdGl2ZS9vcHRpb25zL2NhcHR1cmVfY29udHJvbC5weQ==)
| | |
| ... and [927
more](https://codecov.io/gh/apache/beam/pull/14185/diff?src=pr&el=tree-more) | |
------
[Continue to review full report at
Codecov](https://codecov.io/gh/apache/beam/pull/14185?src=pr&el=continue).
> **Legend** - [Click here to learn
more](https://docs.codecov.io/docs/codecov-delta)
> `Δ = absolute <relative> (impact)`, `ø = not affected`, `? = missing data`
> Powered by
[Codecov](https://codecov.io/gh/apache/beam/pull/14185?src=pr&el=footer). Last
update
[ae5e1a3...a9f6c5f](https://codecov.io/gh/apache/beam/pull/14185?src=pr&el=lastupdated).
Read the [comment docs](https://docs.codecov.io/docs/pull-request-comments).
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Issue Time Tracking
-------------------
Worklog Id: (was: 563736)
Time Spent: 20m (was: 10m)
> VcfIO is not Python3-compatible and there are no plans to make it compatible.
> -----------------------------------------------------------------------------
>
> Key: BEAM-5628
> URL: https://issues.apache.org/jira/browse/BEAM-5628
> Project: Beam
> Issue Type: Sub-task
> Components: sdk-py-core
> Reporter: Valentyn Tymofieiev
> Priority: P3
> Time Spent: 20m
> Remaining Estimate: 0h
>
> Several VcfIO tests fail in Python 3 with TypeError: cannot use a string
> pattern on a bytes-like object
>
> ERROR: test_read_after_splitting (apache_beam.io.vcfio_test.VcfSourceTest)
> "
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> ""/usr/local/google/home/valentyn/projects/beam/clean_head/beam/sdks/python/apache_beam/io/vcfio_test.py"",
> line 336, in test_read_after_splitting
> ] split_records.extend(source_test_utils.read_from_source(*source_info))
> ] File
> ""/usr/local/google/home/valentyn/projects/beam/clean_head/beam/sdks/python/apache_beam/io/source_test_utils.py"",
> line 101, in read_from_source
> for value in reader:
> File
> ""/usr/local/google/home/valentyn/projects/beam/clean_head/beam/sdks/python/apache_beam/io/vcfio.py"",
> line 264, in read_records
> for line in record_iterator:
> File
> ""/usr/local/google/home/valentyn/projects/beam/clean_head/beam/sdks/python/apache_beam/io/vcfio.py"",
> line 330, in __next__
> record = next(self._vcf_reader)
> File
> ""/usr/local/google/home/valentyn/projects/beam/clean_head/beam/sdks/python/target/.tox/py3/lib/python3.5/site-packages/vcf/parser.py"",
> line 543, in __next__
> row = self._row_pattern.split(line.rstrip())
> TypeError: cannot use a string pattern on a bytes-like object
> "
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