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https://issues.apache.org/jira/browse/BEAM-10430?focusedWorklogId=742630&page=com.atlassian.jira.plugin.system.issuetabpanels:worklog-tabpanel#worklog-742630
]
ASF GitHub Bot logged work on BEAM-10430:
-----------------------------------------
Author: ASF GitHub Bot
Created on: 16/Mar/22 18:37
Start Date: 16/Mar/22 18:37
Worklog Time Spent: 10m
Work Description: VictorPlusC commented on pull request #14953:
URL: https://github.com/apache/beam/pull/14953#issuecomment-1069400463
Hi @je-ik, after some investigation through SSHing into my cluster nodes, it
appears that these dependencies are being introduced by:
`/usr/lib/hadoop-yarn/lib/jackson-module-jaxb-annotations-2.10.5.jar`. I was
not able to find a dependency using the missing datatype, so I tried
downloading the other dependency under
/usr/lib/hadoop-yarn/jackson-datatype-jsr310-2.12.3.jar on each of the nodes. I
also copied over the existing dependency into
/usr/lib/hadoop-yarn/jackson-module-jaxb-annotations-2.10.5.jar for all nodes,
then started a new Yarn session, but that did not seem to resolve the issue.
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Issue Time Tracking
-------------------
Worklog Id: (was: 742630)
Time Spent: 5h 50m (was: 5h 40m)
> Can't run WordCount on EMR With Flink Runner via YARN
> -----------------------------------------------------
>
> Key: BEAM-10430
> URL: https://issues.apache.org/jira/browse/BEAM-10430
> Project: Beam
> Issue Type: Bug
> Components: examples-java, runner-flink
> Affects Versions: 2.22.0
> Environment: AWS EMR 5.30.0 running Spark 2.4.5, Flink 1.10.0
> Reporter: Shashi
> Assignee: Etienne Chauchot
> Priority: P3
> Labels: Clarified
> Fix For: Missing
>
> Time Spent: 5h 50m
> Remaining Estimate: 0h
>
> 1) I setup WordCount project as detailed on Beam website..
> {{mvn archetype:generate \
> -DarchetypeGroupId=org.apache.beam \
> -DarchetypeArtifactId=beam-sdks-java-maven-archetypes-examples \
> -DarchetypeVersion=2.22.0 \
> -DgroupId=org.example \
> -DartifactId=word-count-beam \
> -Dversion="0.1" \
> -Dpackage=org.apache.beam.examples \
> -DinteractiveMode=false}}
> 2) mvn clean package -Pflink-runner
> 3) Ran the application on AWS EMR 5.30.0 with Flink 1.10.0
> flink run -m yarn-cluster -yid <yarn_application_id> -p 4 -c
> org.apache.beam.examples.WordCount word-count-beam-bundled-0.1.jar
> –runner=FlinkRunner --inputFile <path_in_s3_of_input_file> --output
> <path_in_s3_of_output_dir>
> 4) Launch failed with the following exception stack trace
> java.util.ServiceConfigurationError: com.fasterxml.jackson.databind.Module:
> Provider com.fasterxml.jackson.module.jaxb.JaxbAnnotationModule not a subtype
> at java.util.ServiceLoader.fail(ServiceLoader.java:239)
> at java.util.ServiceLoader.access$300(ServiceLoader.java:185)
> at java.util.ServiceLoader$LazyIterator.nextService(ServiceLoader.java:376)
> at java.util.ServiceLoader$LazyIterator.next(ServiceLoader.java:404)
> at java.util.ServiceLoader$1.next(ServiceLoader.java:480)
> at
> com.fasterxml.jackson.databind.ObjectMapper.findModules(ObjectMapper.java:1054)
> at
> org.apache.beam.sdk.options.PipelineOptionsFactory.<clinit>(PipelineOptionsFactory.java:471)
> at org.apache.beam.examples.WordCount.main(WordCount.java:190)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at
> org.apache.flink.client.program.PackagedProgram.callMainMethod(PackagedProgram.java:321)
> at
> org.apache.flink.client.program.PackagedProgram.invokeInteractiveModeForExecution(PackagedProgram.java:205)
> at org.apache.flink.client.ClientUtils.executeProgram(ClientUtils.java:138)
> at
> org.apache.flink.client.cli.CliFrontend.executeProgram(CliFrontend.java:664)
> at org.apache.flink.client.cli.CliFrontend.run(CliFrontend.java:213)
> at
> org.apache.flink.client.cli.CliFrontend.parseParameters(CliFrontend.java:895)
> at
> org.apache.flink.client.cli.CliFrontend.lambda$main$10(CliFrontend.java:968)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:422)
> at
> org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1844)
> at
> org.apache.flink.runtime.security.HadoopSecurityContext.runSecured(HadoopSecurityContext.java:41)
> at org.apache.flink.client.cli.CliFrontend.main(CliFrontend.java:968)
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