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https://issues.apache.org/jira/browse/BEAM-14394?focusedWorklogId=765261&page=com.atlassian.jira.plugin.system.issuetabpanels:worklog-tabpanel#worklog-765261
]
ASF GitHub Bot logged work on BEAM-14394:
-----------------------------------------
Author: ASF GitHub Bot
Created on: 03/May/22 02:35
Start Date: 03/May/22 02:35
Worklog Time Spent: 10m
Work Description: asf-ci commented on PR #17532:
URL: https://github.com/apache/beam/pull/17532#issuecomment-1115556855
Can one of the admins verify this patch?
Issue Time Tracking
-------------------
Worklog Id: (was: 765261)
Time Spent: 20m (was: 10m)
> BigQueryIO not thread safe, may fail with ConcurrentModificationException
> -------------------------------------------------------------------------
>
> Key: BEAM-14394
> URL: https://issues.apache.org/jira/browse/BEAM-14394
> Project: Beam
> Issue Type: Bug
> Components: io-java-gcp
> Affects Versions: 2.38.0
> Reporter: Bruno Volpato da Cunha
> Priority: P2
> Time Spent: 20m
> Remaining Estimate: 0h
>
> I am using the Java SDK with a ParDo, in which the code has some parallelism
> (basically, a parallel Stream over an Iterable).
> This ParDo is outputting to a side output that is redirected to BigQuery,
> using Streaming Inserts, with the following parameters:
>
> {code:java}
> return BigQueryIO.<T>write()
> .to(dynamicDestinations)
> .withMethod(Write.Method.STREAMING_INSERTS)
> .withCreateDisposition(CreateDisposition.CREATE_NEVER)
> .withWriteDisposition(WriteDisposition.WRITE_APPEND)
> .withCustomGcsTempLocation(StaticValueProvider.of(gcsTempLocation))
> .withFormatFunction(formatFunction)
> .withFailedInsertRetryPolicy(InsertRetryPolicy.neverRetry())
> .withExtendedErrorInfo(); {code}
>
>
> Sometimes, the following error is observed:
>
> {code:java}
> org.apache.beam.sdk.util.UserCodeException:
> java.util.ConcurrentModificationException
> at
> org.apache.beam.sdk.util.UserCodeException.wrap(UserCodeException.java:39)
> at
> org.apache.beam.sdk.io.gcp.bigquery.CreateTables$CreateTablesFn$DoFnInvoker.invokeProcessElement(Unknown
> Source)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.invokeProcessElement(SimpleDoFnRunner.java:228)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.processElement(SimpleDoFnRunner.java:187)
> at
> org.apache.beam.runners.dataflow.worker.SimpleParDoFn.processElement(SimpleParDoFn.java:340)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.ParDoOperation.process(ParDoOperation.java:44)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.OutputReceiver.process(OutputReceiver.java:49)
> at
> org.apache.beam.runners.dataflow.worker.SimpleParDoFn$1.output(SimpleParDoFn.java:285)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.outputWindowedValue(SimpleDoFnRunner.java:268)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.access$900(SimpleDoFnRunner.java:84)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner$DoFnProcessContext.output(SimpleDoFnRunner.java:416)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner$DoFnProcessContext.output(SimpleDoFnRunner.java:404)
> at
> org.apache.beam.sdk.io.gcp.bigquery.PrepareWrite$1.processElement(PrepareWrite.java:85)
> at
> org.apache.beam.sdk.io.gcp.bigquery.PrepareWrite$1$DoFnInvoker.invokeProcessElement(Unknown
> Source)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.invokeProcessElement(SimpleDoFnRunner.java:228)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.processElement(SimpleDoFnRunner.java:184)
> at
> org.apache.beam.runners.dataflow.worker.SimpleParDoFn.processElement(SimpleParDoFn.java:340)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.ParDoOperation.process(ParDoOperation.java:44)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.OutputReceiver.process(OutputReceiver.java:49)
> at
> org.apache.beam.runners.dataflow.worker.SimpleParDoFn$1.output(SimpleParDoFn.java:285)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.outputWindowedValue(SimpleDoFnRunner.java:268)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.access$900(SimpleDoFnRunner.java:84)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner$DoFnProcessContext.output(SimpleDoFnRunner.java:416)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner$DoFnProcessContext.output(SimpleDoFnRunner.java:404)
> at
> org.apache.beam.sdk.transforms.FlatMapElements$2.processElement(FlatMapElements.java:156)
> at
> org.apache.beam.sdk.transforms.FlatMapElements$2$DoFnInvoker.invokeProcessElement(Unknown
> Source)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.invokeProcessElement(SimpleDoFnRunner.java:228)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.processElement(SimpleDoFnRunner.java:187)
> at
> org.apache.beam.runners.dataflow.worker.SimpleParDoFn.processElement(SimpleParDoFn.java:340)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.ParDoOperation.process(ParDoOperation.java:44)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.OutputReceiver.process(OutputReceiver.java:49)
> at
> org.apache.beam.runners.dataflow.worker.SimpleParDoFn$1.output(SimpleParDoFn.java:285)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.outputWindowedValue(SimpleDoFnRunner.java:268)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.access$900(SimpleDoFnRunner.java:84)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner$DoFnProcessContext.output(SimpleDoFnRunner.java:416)
> at <<Some Parallel Custom Code.java>>
> at
> java.base/java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:195)
> at
> java.base/java.util.ArrayList$ArrayListSpliterator.forEachRemaining(ArrayList.java:1655)
> at
> java.base/java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:484)
> at
> java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:474)
> at
> java.base/java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:913)
> at
> java.base/java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
> at
> java.base/java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:578)
> at <<Some Parallel Custom Code.java>>
> at
> java.base/java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:195)
> at
> java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Spliterators.java:948)
> at
> java.base/java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:484)
> at
> java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:474)
> at
> java.base/java.util.stream.ReduceOps$ReduceTask.doLeaf(ReduceOps.java:952)
> at
> java.base/java.util.stream.ReduceOps$ReduceTask.doLeaf(ReduceOps.java:926)
> at
> java.base/java.util.stream.AbstractTask.compute(AbstractTask.java:327)
> at
> java.base/java.util.concurrent.CountedCompleter.exec(CountedCompleter.java:746)
> at
> java.base/java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:290)
> at
> java.base/java.util.concurrent.ForkJoinTask.doInvoke(ForkJoinTask.java:408)
> at
> java.base/java.util.concurrent.ForkJoinTask.invoke(ForkJoinTask.java:736)
> at
> java.base/java.util.stream.ReduceOps$ReduceOp.evaluateParallel(ReduceOps.java:919)
> at
> java.base/java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:233)
> at
> java.base/java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:578)
> at <<Some Parallel Custom Code.java>>
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.invokeProcessElement(SimpleDoFnRunner.java:228)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.processElement(SimpleDoFnRunner.java:184)
> at
> org.apache.beam.runners.dataflow.worker.SimpleParDoFn.processElement(SimpleParDoFn.java:340)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.ParDoOperation.process(ParDoOperation.java:44)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.OutputReceiver.process(OutputReceiver.java:49)
> at
> org.apache.beam.runners.dataflow.worker.SimpleParDoFn$1.output(SimpleParDoFn.java:285)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.outputWindowedValue(SimpleDoFnRunner.java:268)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.access$900(SimpleDoFnRunner.java:84)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner$DoFnProcessContext.output(SimpleDoFnRunner.java:416)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner$DoFnProcessContext.output(SimpleDoFnRunner.java:404)
> at <<Some Parallel Custom Code.java>>
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.invokeProcessElement(SimpleDoFnRunner.java:228)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SimpleDoFnRunner.processElement(SimpleDoFnRunner.java:187)
> at
> org.apache.beam.runners.dataflow.worker.SimpleParDoFn.processElement(SimpleParDoFn.java:340)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.ParDoOperation.process(ParDoOperation.java:44)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.OutputReceiver.process(OutputReceiver.java:49)
> at
> org.apache.beam.runners.dataflow.worker.GroupAlsoByWindowsParDoFn$1.output(GroupAlsoByWindowsParDoFn.java:185)
> at
> org.apache.beam.runners.dataflow.worker.GroupAlsoByWindowFnRunner$1.outputWindowedValue(GroupAlsoByWindowFnRunner.java:108)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.ReduceFnRunner.lambda$onTrigger$1(ReduceFnRunner.java:1058)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.ReduceFnContextFactory$OnTriggerContextImpl.output(ReduceFnContextFactory.java:445)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.SystemReduceFn.onTrigger(SystemReduceFn.java:130)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.ReduceFnRunner.onTrigger(ReduceFnRunner.java:1061)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.ReduceFnRunner.emit(ReduceFnRunner.java:932)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.ReduceFnRunner.processElements(ReduceFnRunner.java:373)
> at
> org.apache.beam.runners.dataflow.worker.StreamingGroupAlsoByWindowViaWindowSetFn.processElement(StreamingGroupAlsoByWindowViaWindowSetFn.java:96)
> at
> org.apache.beam.runners.dataflow.worker.StreamingGroupAlsoByWindowViaWindowSetFn.processElement(StreamingGroupAlsoByWindowViaWindowSetFn.java:43)
> at
> org.apache.beam.runners.dataflow.worker.GroupAlsoByWindowFnRunner.invokeProcessElement(GroupAlsoByWindowFnRunner.java:121)
> at
> org.apache.beam.runners.dataflow.worker.GroupAlsoByWindowFnRunner.processElement(GroupAlsoByWindowFnRunner.java:73)
> at
> org.apache.beam.runners.dataflow.worker.repackaged.org.apache.beam.runners.core.LateDataDroppingDoFnRunner.processElement(LateDataDroppingDoFnRunner.java:80)
> at
> org.apache.beam.runners.dataflow.worker.GroupAlsoByWindowsParDoFn.processElement(GroupAlsoByWindowsParDoFn.java:137)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.ParDoOperation.process(ParDoOperation.java:44)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.OutputReceiver.process(OutputReceiver.java:49)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.ReadOperation.runReadLoop(ReadOperation.java:212)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.ReadOperation.start(ReadOperation.java:163)
> at
> org.apache.beam.runners.dataflow.worker.util.common.worker.MapTaskExecutor.execute(MapTaskExecutor.java:83)
> at
> org.apache.beam.runners.dataflow.worker.StreamingDataflowWorker.process(StreamingDataflowWorker.java:1445)
> at
> org.apache.beam.runners.dataflow.worker.StreamingDataflowWorker.access$1100(StreamingDataflowWorker.java:165)
> at
> org.apache.beam.runners.dataflow.worker.StreamingDataflowWorker$7.run(StreamingDataflowWorker.java:1120)
> at
> org.apache.beam.runners.dataflow.worker.util.BoundedQueueExecutor.lambda$executeLockHeld$0(BoundedQueueExecutor.java:133)
> at
> java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
> at
> java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
> at java.base/java.lang.Thread.run(Thread.java:834)
> Caused by: java.util.ConcurrentModificationException
> at java.base/java.util.HashMap.computeIfAbsent(HashMap.java:1134)
> at
> org.apache.beam.sdk.io.gcp.bigquery.CreateTables$CreateTablesFn.processElement(CreateTables.java:104)
> " {code}
>
>
> Unfortunately, I was trying to come up with a toy example to post here but
> could not reproduce it there.
>
> When investigating the class CreateTables, it instantiates one
> _Map<DestinationT, TableDestination> destinations = Maps.newHashMap()_ ** per
> bundle, and _processElement_ can happen concurrently, following the user's
> code.
> The current implementation for the Map is a HashMap. I believe that either
> synchronizing the _destinations.computeIfAbsent_ call or simply initializing
> it with Maps.newConcurrentMap() would be enough.
>
> I am open to implementing this change and leaning towards just moving to a
> ConcurrentHashMap, so just checking if I am not missing any detail.
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