LI HAO created BEAM-7695:
----------------------------
Summary: Read TFRecord Files from hdfs will meet exception if file
size is large
Key: BEAM-7695
URL: https://issues.apache.org/jira/browse/BEAM-7695
Project: Beam
Issue Type: Bug
Components: io-java-tfrecord
Affects Versions: 2.13.0, 2.12.0, 2.11.0, 2.10.0, 2.9.0, 2.8.0, 2.7.0,
2.6.0, 2.5.0, 2.4.0, 2.3.0, 2.2.0
Reporter: LI HAO
I read the TFRecord files which is in HDFS will meet error.
* The single TFRecord file is larger than 3GB.
* The total size larger than 1TB.
* Using Beam 2.13.0 + Flinkrunner 2.13.0, I also test 2.11.0/2.12.0
The dependency jar:
``` build.gradle
dependencies {
// This dependency is found on compile classpath of this component and
consumers.
//implementation 'com.google.guava:guava:27.0.1-jre'
compile 'org.apache.beam:beam-sdks-java-core:2.13.0'
compile 'org.apache.beam:beam-vendor-guava-20_0:0.1'
compile 'org.tensorflow:tensorflow-hadoop:1.13.1'
compile 'org.apache.beam:beam-runners-direct-java:2.13.0'
//implementation "org.apache.beam:beam-sdks-java-core:2.13.0"
compile "org.apache.beam:beam-runners-flink_2.11:2.13.0"
compile "org.apache.beam:beam-sdks-java-io-hadoop-file-system:2.13.0"
compile "org.apache.hadoop:hadoop-common:2.7.3"
compile "org.apache.hadoop:hadoop-client:2.7.3"
compile "org.apache.hadoop:hadoop-mapreduce-client-core:2.7.3"
compile "org.tensorflow:proto:1.13.1"
compile "org.apache.beam:beam-sdks-java-extensions-sketching:2.13.0"
// Use JUnit test framework
testImplementation 'junit:junit:4.12'
}
```
The error msg:
```
------------------------------------------------------------
The program finished with the following exception:
org.apache.flink.client.program.ProgramInvocationException: The main method
caused an error.
at
org.apache.flink.client.program.PackagedProgram.callMainMethod(PackagedProgram.java:546)
at
org.apache.flink.client.program.PackagedProgram.invokeInteractiveModeForExecution(PackagedProgram.java:421)
at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:427)
at org.apache.flink.client.cli.CliFrontend.executeProgram(CliFrontend.java:813)
at org.apache.flink.client.cli.CliFrontend.runProgram(CliFrontend.java:287)
at org.apache.flink.client.cli.CliFrontend.run(CliFrontend.java:213)
at
org.apache.flink.client.cli.CliFrontend.parseParameters(CliFrontend.java:1050)
at
org.apache.flink.client.cli.CliFrontend.lambda$main$11(CliFrontend.java:1126)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1692)
at
org.apache.flink.runtime.security.HadoopSecurityContext.runSecured(HadoopSecurityContext.java:41)
at org.apache.flink.client.cli.CliFrontend.main(CliFrontend.java:1126)
Caused by: java.lang.RuntimeException: Pipeline execution failed
at org.apache.beam.runners.flink.FlinkRunner.run(FlinkRunner.java:116)
at org.apache.beam.sdk.Pipeline.run(Pipeline.java:313)
at org.apache.beam.sdk.Pipeline.run(Pipeline.java:299)
at avazu.data.transform.App.testTfrecordQIYU(App.java:572)
at avazu.data.transform.App.main(App.java:744)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.apache.flink.client.program.PackagedProgram.callMainMethod(PackagedProgram.java:529)
... 12 more
Caused by: org.apache.flink.client.program.ProgramInvocationException: Job
failed. (JobID: fe4ce5375efbbb55e56967e4c7a975b2)
at
org.apache.flink.client.program.rest.RestClusterClient.submitJob(RestClusterClient.java:268)
at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:487)
at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:475)
at
org.apache.flink.client.program.ContextEnvironment.execute(ContextEnvironment.java:62)
at
org.apache.beam.runners.flink.FlinkPipelineExecutionEnvironment.executePipeline(FlinkPipelineExecutionEnvironment.java:139)
at org.apache.beam.runners.flink.FlinkRunner.run(FlinkRunner.java:113)
... 21 more
Caused by: org.apache.flink.runtime.client.JobExecutionException: Job execution
failed.
at
org.apache.flink.runtime.jobmaster.JobResult.toJobExecutionResult(JobResult.java:146)
at
org.apache.flink.client.program.rest.RestClusterClient.submitJob(RestClusterClient.java:265)
... 26 more
Caused by: java.io.IOException: Mismatch of length mask when reading a record.
Expected 808268081 but received 1769712859.
at org.apache.beam.sdk.io.TFRecordIO$TFRecordCodec.read(TFRecordIO.java:651)
at
org.apache.beam.sdk.io.TFRecordIO$TFRecordSource$TFRecordReader.readNextRecord(TFRecordIO.java:530)
at
org.apache.beam.sdk.io.CompressedSource$CompressedReader.readNextRecord(CompressedSource.java:431)
at
org.apache.beam.sdk.io.FileBasedSource$FileBasedReader.advanceImpl(FileBasedSource.java:484)
at
org.apache.beam.sdk.io.FileBasedSource$FileBasedReader.startImpl(FileBasedSource.java:479)
at
org.apache.beam.sdk.io.OffsetBasedSource$OffsetBasedReader.start(OffsetBasedSource.java:249)
at
org.apache.beam.runners.flink.metrics.ReaderInvocationUtil.invokeStart(ReaderInvocationUtil.java:51)
at
org.apache.beam.runners.flink.translation.wrappers.SourceInputFormat.open(SourceInputFormat.java:75)
at
org.apache.beam.runners.flink.translation.wrappers.SourceInputFormat.open(SourceInputFormat.java:42)
at
org.apache.flink.runtime.operators.DataSourceTask.invoke(DataSourceTask.java:170)
at org.apache.flink.runtime.taskmanager.Task.run(Task.java:704)
at java.lang.Thread.run(Thread.java:745)
```
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