Robert Metzger created FLINK-6641:
-------------------------------------
Summary: HA recovery on YARN fails due to missing files in HDFS
Key: FLINK-6641
URL: https://issues.apache.org/jira/browse/FLINK-6641
Project: Flink
Issue Type: Bug
Components: Distributed Coordination, YARN
Affects Versions: 1.3.0
Reporter: Robert Metzger
Priority: Blocker
While testing the 1.3 RC1, I was unable to recovery from a JobManager failure.
The following error messages appear in the JobManager that is started by YARN:
{code}
2017-05-19 14:41:38,030 INFO
org.apache.flink.runtime.webmonitor.JobManagerRetriever - New leader
reachable under
akka.tcp://flink@permanent-qa-cluster-i7c9.c.astral-sorter-757.internal:36528/user/jobmanager:6539dc04-d7fe-4f85-a0b6-09bfb0de8a58.
2017-05-19 14:41:38,033 INFO org.apache.flink.yarn.YarnFlinkResourceManager
- Resource Manager associating with leading JobManager
Actor[akka://flink/user/jobmanager#1602741108] - leader session
6539dc04-d7fe-4f85-a0b6-09bfb0de8a58
2017-05-19 14:41:38,033 INFO org.apache.flink.yarn.YarnFlinkResourceManager
- Requesting new TaskManager container with 1024 megabytes memory.
Pending requests: 1
2017-05-19 14:41:38,781 INFO org.apache.flink.yarn.YarnFlinkResourceManager
- Received new container: container_1494870922226_0061_02_000002 -
Remaining pending container requests: 0
2017-05-19 14:41:38,782 INFO org.apache.flink.yarn.YarnFlinkResourceManager
- Launching TaskManager in container ContainerInLaunch @
1495204898782: Container: [ContainerId: container_1494870922226_0061_02_000002,
NodeId: permanent-qa-cluster-d3iz.c.astral-sorter-757.internal:8041,
NodeHttpAddress: permanent-qa-cluster-d3iz.c.astral-sorter-757.internal:8042,
Resource: <memory:1024, vCores:1>, Priority: 0, Token: Token { kind:
ContainerToken, service: 10.240.0.32:8041 }, ] on host
permanent-qa-cluster-d3iz.c.astral-sorter-757.internal
2017-05-19 14:41:38,788 INFO
org.apache.hadoop.yarn.client.api.impl.ContainerManagementProtocolProxy -
Opening proxy : permanent-qa-cluster-d3iz.c.astral-sorter-757.internal:8041
2017-05-19 14:41:44,284 INFO org.apache.flink.yarn.YarnFlinkResourceManager
- Container container_1494870922226_0061_02_000002 failed, with a
TaskManager in launch or registration. Exit status: -1000
2017-05-19 14:41:44,284 INFO org.apache.flink.yarn.YarnFlinkResourceManager
- Diagnostics for container container_1494870922226_0061_02_000002
in state COMPLETE : exitStatus=-1000 diagnostics=File does not exist:
hdfs://nameservice1/user/robert/.flink/application_1494870922226_0061/cf9287fe-ac75-4066-a648-91787d946890-taskmanager-conf.yaml
java.io.FileNotFoundException: File does not exist:
hdfs://nameservice1/user/robert/.flink/application_1494870922226_0061/cf9287fe-ac75-4066-a648-91787d946890-taskmanager-conf.yaml
at
org.apache.hadoop.hdfs.DistributedFileSystem$19.doCall(DistributedFileSystem.java:1219)
at
org.apache.hadoop.hdfs.DistributedFileSystem$19.doCall(DistributedFileSystem.java:1211)
at
org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
at
org.apache.hadoop.hdfs.DistributedFileSystem.getFileStatus(DistributedFileSystem.java:1211)
at org.apache.hadoop.yarn.util.FSDownload.copy(FSDownload.java:251)
at org.apache.hadoop.yarn.util.FSDownload.access$000(FSDownload.java:61)
at org.apache.hadoop.yarn.util.FSDownload$2.run(FSDownload.java:359)
at org.apache.hadoop.yarn.util.FSDownload$2.run(FSDownload.java:357)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
at org.apache.hadoop.yarn.util.FSDownload.call(FSDownload.java:356)
at org.apache.hadoop.yarn.util.FSDownload.call(FSDownload.java:60)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
{code}
and
{code}
2017-05-19 14:41:48,133 INFO org.apache.flink.yarn.YarnJobManager
- Submitting recovered job 35df3b24209e9ebea12407e6747a746c.
2017-05-19 14:41:48,133 INFO org.apache.flink.yarn.YarnJobManager
- Submitting job 35df3b24209e9ebea12407e6747a746c
(CarTopSpeedWindowingExample) (Recovery).
2017-05-19 14:41:48,139 ERROR org.apache.flink.yarn.YarnJobManager
- Failed to submit job 35df3b24209e9ebea12407e6747a746c
(CarTopSpeedWindowingExample)
org.apache.flink.runtime.client.JobSubmissionException: Cannot set up the user
code libraries: Cannot get library with hash
935fb4229e27f166d5ba8912cd47974ad436af20
at
org.apache.flink.runtime.jobmanager.JobManager.org$apache$flink$runtime$jobmanager$JobManager$$submitJob(JobManager.scala:1267)
at
org.apache.flink.runtime.jobmanager.JobManager$$anonfun$handleMessage$1.applyOrElse(JobManager.scala:517)
at
scala.runtime.AbstractPartialFunction$mcVL$sp.apply$mcVL$sp(AbstractPartialFunction.scala:33)
at
scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:33)
at
scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:25)
at
org.apache.flink.runtime.clusterframework.ContaineredJobManager$$anonfun$handleContainerMessage$1.applyOrElse(ContaineredJobManager.scala:100)
at scala.PartialFunction$OrElse.apply(PartialFunction.scala:162)
at
org.apache.flink.runtime.LeaderSessionMessageFilter$$anonfun$receive$1.applyOrElse(LeaderSessionMessageFilter.scala:38)
at
scala.runtime.AbstractPartialFunction$mcVL$sp.apply$mcVL$sp(AbstractPartialFunction.scala:33)
at
scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:33)
at
scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:25)
at
org.apache.flink.runtime.LogMessages$$anon$1.apply(LogMessages.scala:33)
at
org.apache.flink.runtime.LogMessages$$anon$1.apply(LogMessages.scala:28)
at scala.PartialFunction$class.applyOrElse(PartialFunction.scala:118)
at
org.apache.flink.runtime.LogMessages$$anon$1.applyOrElse(LogMessages.scala:28)
at akka.actor.Actor$class.aroundReceive(Actor.scala:467)
at
org.apache.flink.runtime.jobmanager.JobManager.aroundReceive(JobManager.scala:125)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516)
at akka.actor.ActorCell.invoke(ActorCell.scala:487)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238)
at akka.dispatch.Mailbox.run(Mailbox.scala:220)
at
akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at
scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at
scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at
scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Caused by: java.io.IOException: Cannot get library with hash
935fb4229e27f166d5ba8912cd47974ad436af20
at
org.apache.flink.runtime.execution.librarycache.BlobLibraryCacheManager.registerReferenceToBlobKeyAndGetURL(BlobLibraryCacheManager.java:264)
at
org.apache.flink.runtime.execution.librarycache.BlobLibraryCacheManager.registerTask(BlobLibraryCacheManager.java:117)
at
org.apache.flink.runtime.execution.librarycache.BlobLibraryCacheManager.registerJob(BlobLibraryCacheManager.java:89)
at
org.apache.flink.runtime.jobmanager.JobManager.org$apache$flink$runtime$jobmanager$JobManager$$submitJob(JobManager.scala:1262)
... 25 more
Caused by: java.io.IOException: Failed to copy from blob store.
at org.apache.flink.runtime.blob.BlobServer.getURL(BlobServer.java:387)
at
org.apache.flink.runtime.execution.librarycache.BlobLibraryCacheManager.registerReferenceToBlobKeyAndGetURL(BlobLibraryCacheManager.java:255)
... 28 more
Caused by: java.io.FileNotFoundException: File does not exist:
/shared/recovery-dir/application_1494870922226_0061/blob/cache/blob_935fb4229e27f166d5ba8912cd47974ad436af20
at
org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
at
org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1963)
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1904)
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1884)
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1856)
at
org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:568)
at
org.apache.hadoop.hdfs.server.namenode.AuthorizationProviderProxyClientProtocol.getBlockLocations(AuthorizationProviderProxyClientProtocol.java:89)
at
org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:363)
at
org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at
org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:617)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1073)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2086)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2082)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2080)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
org.apache.hadoop.ipc.RemoteException.instantiateException(RemoteException.java:106)
at
org.apache.hadoop.ipc.RemoteException.unwrapRemoteException(RemoteException.java:73)
at
org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1133)
at
org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1121)
at
org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1111)
at
org.apache.hadoop.hdfs.DFSInputStream.fetchLocatedBlocksAndGetLastBlockLength(DFSInputStream.java:272)
at
org.apache.hadoop.hdfs.DFSInputStream.openInfo(DFSInputStream.java:239)
at org.apache.hadoop.hdfs.DFSInputStream.<init>(DFSInputStream.java:232)
at org.apache.hadoop.hdfs.DFSClient.open(DFSClient.java:1279)
at
org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:296)
at
org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:292)
at
org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
at
org.apache.hadoop.hdfs.DistributedFileSystem.open(DistributedFileSystem.java:292)
at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:765)
at
org.apache.flink.runtime.fs.hdfs.HadoopFileSystem.open(HadoopFileSystem.java:404)
at
org.apache.flink.runtime.fs.hdfs.HadoopFileSystem.open(HadoopFileSystem.java:48)
at
org.apache.flink.runtime.blob.FileSystemBlobStore.get(FileSystemBlobStore.java:106)
at
org.apache.flink.runtime.blob.FileSystemBlobStore.get(FileSystemBlobStore.java:87)
at org.apache.flink.runtime.blob.BlobServer.getURL(BlobServer.java:384)
... 29 more
Caused by:
org.apache.hadoop.ipc.RemoteException(java.io.FileNotFoundException): File does
not exist:
/shared/recovery-dir/application_1494870922226_0061/blob/cache/blob_935fb4229e27f166d5ba8912cd47974ad436af20
at
org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
at
org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1963)
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1904)
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1884)
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1856)
at
org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:568)
at
org.apache.hadoop.hdfs.server.namenode.AuthorizationProviderProxyClientProtocol.getBlockLocations(AuthorizationProviderProxyClientProtocol.java:89)
at
org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:363)
at
org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at
org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:617)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1073)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2086)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2082)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2080)
at org.apache.hadoop.ipc.Client.call(Client.java:1406)
at org.apache.hadoop.ipc.Client.call(Client.java:1359)
at
org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:206)
at com.sun.proxy.$Proxy9.getBlockLocations(Unknown Source)
at
org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getBlockLocations(ClientNamenodeProtocolTranslatorPB.java:206)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at
org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:186)
at
org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy10.getBlockLocations(Unknown Source)
at
org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1131)
... 45 more
{code}
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