Github user StephanEwen commented on the issue:

    https://github.com/apache/flink/pull/5740
  
    The TaskManagers have one (or more) root directories for all temp files. 
They only have one shutdown hook that removes them at the very end. No separate 
hooks in the separate components.
    
    Should we try and have the same in the JobManager?
    
    Aside form that, I think previously users liked that the jar upload 
directory was not cleaned by default when they explicitly configured it. Does 
this change preserve the behavior?


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