Github user StephanEwen commented on a diff in the pull request:

    https://github.com/apache/flink/pull/1017#discussion_r37174502
  
    --- Diff: 
flink-staging/flink-streaming/flink-streaming-core/src/main/java/org/apache/flink/streaming/runtime/tasks/TwoInputStreamTask.java
 ---
    @@ -27,114 +26,65 @@
     import org.apache.flink.streaming.api.graph.StreamEdge;
     import org.apache.flink.streaming.api.operators.TwoInputStreamOperator;
     import org.apache.flink.streaming.runtime.io.StreamTwoInputProcessor;
    -import org.slf4j.Logger;
    -import org.slf4j.LoggerFactory;
     
     public class TwoInputStreamTask<IN1, IN2, OUT> extends StreamTask<OUT, 
TwoInputStreamOperator<IN1, IN2, OUT>> {
     
    -   private static final Logger LOG = 
LoggerFactory.getLogger(TwoInputStreamTask.class);
    -
        private StreamTwoInputProcessor<IN1, IN2> inputProcessor;
    +   
    +   private volatile boolean running = true;
     
        @Override
    -   public void registerInputOutput() {
    -           try {
    -                   super.registerInputOutput();
    +   public void init() throws Exception {
    +           TypeSerializer<IN1> inputDeserializer1 = 
configuration.getTypeSerializerIn1(userClassLoader);
    +           TypeSerializer<IN2> inputDeserializer2 = 
configuration.getTypeSerializerIn2(userClassLoader);
        
    -                   TypeSerializer<IN1> inputDeserializer1 = 
configuration.getTypeSerializerIn1(userClassLoader);
    -                   TypeSerializer<IN2> inputDeserializer2 = 
configuration.getTypeSerializerIn2(userClassLoader);
    +           int numberOfInputs = configuration.getNumberOfInputs();
        
    -                   int numberOfInputs = configuration.getNumberOfInputs();
    +           ArrayList<InputGate> inputList1 = new ArrayList<InputGate>();
    +           ArrayList<InputGate> inputList2 = new ArrayList<InputGate>();
        
    -                   ArrayList<InputGate> inputList1 = new 
ArrayList<InputGate>();
    -                   ArrayList<InputGate> inputList2 = new 
ArrayList<InputGate>();
    +           List<StreamEdge> inEdges = 
configuration.getInPhysicalEdges(userClassLoader);
        
    -                   List<StreamEdge> inEdges = 
configuration.getInPhysicalEdges(userClassLoader);
    -   
    -                   for (int i = 0; i < numberOfInputs; i++) {
    -                           int inputType = inEdges.get(i).getTypeNumber();
    -                           InputGate reader = 
getEnvironment().getInputGate(i);
    -                           switch (inputType) {
    -                                   case 1:
    -                                           inputList1.add(reader);
    -                                           break;
    -                                   case 2:
    -                                           inputList2.add(reader);
    -                                           break;
    -                                   default:
    -                                           throw new 
RuntimeException("Invalid input type number: " + inputType);
    -                           }
    +           for (int i = 0; i < numberOfInputs; i++) {
    +                   int inputType = inEdges.get(i).getTypeNumber();
    +                   InputGate reader = getEnvironment().getInputGate(i);
    +                   switch (inputType) {
    +                           case 1:
    +                                   inputList1.add(reader);
    +                                   break;
    +                           case 2:
    --- End diff --
    
    I would like to address that in a followup, as this creates conflicts with 
#988 otherwise.


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