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https://issues.apache.org/jira/browse/FLINK-14123?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16952028#comment-16952028
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Xintong Song edited comment on FLINK-14123 at 10/16/19 1:59 AM:
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I don't know neither. I think you can try ask in the dev mailing list.
was (Author: xintongsong):
I don't know either. I think you can try ask in the dev mailing list.
> Change taskmanager.memory.fraction default value to 0.6
> -------------------------------------------------------
>
> Key: FLINK-14123
> URL: https://issues.apache.org/jira/browse/FLINK-14123
> Project: Flink
> Issue Type: Improvement
> Components: Runtime / Configuration
> Affects Versions: 1.9.0
> Reporter: liupengcheng
> Priority: Major
> Labels: pull-request-available
> Time Spent: 10m
> Remaining Estimate: 0h
>
> Currently, we are testing flink batch task, such as terasort, however, it
> started only awhile then it failed due to OOM.
>
> {code:java}
> org.apache.flink.client.program.ProgramInvocationException: Job failed.
> (JobID: a807e1d635bd4471ceea4282477f8850)
> at
> org.apache.flink.client.program.rest.RestClusterClient.submitJob(RestClusterClient.java:262)
> at
> org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:338)
> at
> org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:326)
> at
> org.apache.flink.client.program.ContextEnvironment.execute(ContextEnvironment.java:62)
> at
> org.apache.flink.api.scala.ExecutionEnvironment.execute(ExecutionEnvironment.scala:539)
> at
> com.github.ehiggs.spark.terasort.FlinkTeraSort$.main(FlinkTeraSort.scala:89)
> at
> com.github.ehiggs.spark.terasort.FlinkTeraSort.main(FlinkTeraSort.scala)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at
> org.apache.flink.client.program.PackagedProgram.callMainMethod(PackagedProgram.java:604)
> at
> org.apache.flink.client.program.PackagedProgram.invokeInteractiveModeForExecution(PackagedProgram.java:466)
> at
> org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:274)
> at
> org.apache.flink.client.cli.CliFrontend.executeProgram(CliFrontend.java:746)
> at
> org.apache.flink.client.cli.CliFrontend.runProgram(CliFrontend.java:273)
> at org.apache.flink.client.cli.CliFrontend.run(CliFrontend.java:205)
> at
> org.apache.flink.client.cli.CliFrontend.parseParameters(CliFrontend.java:1007)
> at
> org.apache.flink.client.cli.CliFrontend.lambda$main$10(CliFrontend.java:1080)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:422)
> at
> org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1886)
> at
> org.apache.flink.runtime.security.HadoopSecurityContext.runSecured(HadoopSecurityContext.java:41)
> at org.apache.flink.client.cli.CliFrontend.main(CliFrontend.java:1080)
> Caused by: org.apache.flink.runtime.client.JobExecutionException: Job
> execution failed.
> at
> org.apache.flink.runtime.jobmaster.JobResult.toJobExecutionResult(JobResult.java:146)
> at
> org.apache.flink.client.program.rest.RestClusterClient.submitJob(RestClusterClient.java:259)
> ... 23 more
> Caused by: java.lang.RuntimeException: Error obtaining the sorted input:
> Thread 'SortMerger Reading Thread' terminated due to an exception: GC
> overhead limit exceeded
> at
> org.apache.flink.runtime.operators.sort.UnilateralSortMerger.getIterator(UnilateralSortMerger.java:650)
> at
> org.apache.flink.runtime.operators.BatchTask.getInput(BatchTask.java:1109)
> at org.apache.flink.runtime.operators.NoOpDriver.run(NoOpDriver.java:82)
> at org.apache.flink.runtime.operators.BatchTask.run(BatchTask.java:504)
> at
> org.apache.flink.runtime.operators.BatchTask.invoke(BatchTask.java:369)
> at org.apache.flink.runtime.taskmanager.Task.doRun(Task.java:705)
> at org.apache.flink.runtime.taskmanager.Task.run(Task.java:530)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: java.io.IOException: Thread 'SortMerger Reading Thread' terminated
> due to an exception: GC overhead limit exceeded
> at
> org.apache.flink.runtime.operators.sort.UnilateralSortMerger$ThreadBase.run(UnilateralSortMerger.java:831)
> Caused by: java.lang.OutOfMemoryError: GC overhead limit exceeded
> at
> org.apache.flink.api.common.typeutils.base.array.BytePrimitiveArraySerializer.deserialize(BytePrimitiveArraySerializer.java:84)
> at
> org.apache.flink.api.common.typeutils.base.array.BytePrimitiveArraySerializer.deserialize(BytePrimitiveArraySerializer.java:33)
> at
> org.apache.flink.api.scala.typeutils.CaseClassSerializer.deserialize(CaseClassSerializer.scala:121)
> at
> org.apache.flink.api.scala.typeutils.CaseClassSerializer.deserialize(CaseClassSerializer.scala:114)
> at
> org.apache.flink.api.scala.typeutils.CaseClassSerializer.deserialize(CaseClassSerializer.scala:32)
> at
> org.apache.flink.runtime.plugable.ReusingDeserializationDelegate.read(ReusingDeserializationDelegate.java:57)
> at
> org.apache.flink.runtime.io.network.api.serialization.SpillingAdaptiveSpanningRecordDeserializer.getNextRecord(SpillingAdaptiveSpanningRecordDeserializer.java:106)
> at
> org.apache.flink.runtime.io.network.api.reader.AbstractRecordReader.getNextRecord(AbstractRecordReader.java:72)
> at
> org.apache.flink.runtime.io.network.api.reader.MutableRecordReader.next(MutableRecordReader.java:47)
> at
> org.apache.flink.runtime.operators.util.ReaderIterator.next(ReaderIterator.java:59)
> at
> org.apache.flink.runtime.operators.sort.UnilateralSortMerger$ReadingThread.go(UnilateralSortMerger.java:1066)
> at
> org.apache.flink.runtime.operators.sort.UnilateralSortMerger$ThreadBase.run(UnilateralSortMerger.java:827)
> {code}
> After carefully debugging, I find that it's because the default JVM Option
> value `NewRatio` is 2, that means the old generation ocuppies 2/3 (0.66) of
> the heap memory, but we allocate 0.7 (`taskmanager.memory.fraction` default
> value) of the heap memory in `UnilateralSortMerger`, that's a little bit
> aggressive.
> DEBUG log:
> {code:java}
> 2019-09-18 13:39:53,869 DEBUG
> org.apache.flink.runtime.operators.sort.UnilateralSortMerger - Instantiating
> sorter with 8060 pages of sorting memory (=264110080 bytes total) divided
> over 2 sort buffers (4030 pages per buffer). Using 4 buffers for writing
> sorted results and merging maximally 128 streams at once. Using 0 memory
> segments for large record spilling
> {code}
> gc.log:
> {code:java}
> 2019-09-18T13:41:37.503+0800: 119.744: [Full GC (Ergonomics) [PSYoungGen:
> 40960K->39766K(81920K)] [ParOldGen: 245683K->245683K(245760K)]
> 286643K->285450K(327680K), [Metaspace: 56311K->56311K(1099776K)], 0.0963178
> secs] [Times: user=0.22 sys=0.00, real=0.10 secs]
> 2019-09-18T13:41:37.599+0800: 119.841: Total time for which application
> threads were stopped: 0.0967768 seconds, Stopping threads took: 0.0001084
> seconds
> 2019-09-18T13:41:37.602+0800: 119.843: [Full GC (Ergonomics) [PSYoungGen:
> 40960K->39770K(81920K)] [ParOldGen: 245683K->245683K(245760K)]
> 286643K->285453K(327680K), [Metaspace: 56311K->56311K(1099776K)], 0.2078965
> secs] [Times: user=0.56 sys=0.06, real=0.21 secs]
> 2019-09-18T13:41:37.810+0800: 120.051: Total time for which application
> threads were stopped: 0.2084774 seconds, Stopping threads took: 0.0001217
> seconds
> 2019-09-18T13:41:37.811+0800: 120.053: [Full GC (Ergonomics) [PSYoungGen:
> 40960K->39766K(81920K)] [ParOldGen: 245683K->245683K(245760K)]
> 286643K->285450K(327680K), [Metaspace: 56312K->56312K(1099776K)], 0.0893081
> secs] [Times: user=0.19 sys=0.00, real=0.09 secs]
> 2019-09-18T13:41:37.901+0800: 120.143: Total time for which application
> threads were stopped: 0.0898797 seconds, Stopping threads took: 0.0001453
> seconds
> 2019-09-18T13:41:37.903+0800: 120.145: [Full GC (Ergonomics) [PSYoungGen:
> 40960K->39767K(81920K)] [ParOldGen: 245683K->245683K(245760K)]
> 286643K->285451K(327680K), [Metaspace: 56313K->56313K(1099776K)], 0.0862173
> secs] [Times: user=0.19 sys=0.01, real=0.09 secs]
> 2019-09-18T13:41:37.989+0800: 120.231: Total time for which application
> threads were stopped: 0.0870664 seconds, Stopping threads took: 0.0005005
> seconds
> 2019-09-18T13:41:37.991+0800: 120.232: Total time for which application
> threads were stopped: 0.0003551 seconds, Stopping threads took: 0.0001456
> seconds
> 2019-09-18T13:41:37.991+0800: 120.233: [Full GC (Ergonomics) [PSYoungGen:
> 40960K->39767K(81920K)] [ParOldGen: 245683K->245683K(245760K)]
> 286643K->285451K(327680K), [Metaspace: 56313K->56313K(1099776K)], 0.0860513
> secs] [Times: user=0.19 sys=0.00, real=0.08 secs]
> 2019-09-18T13:41:38.077+0800: 120.319: Total time for which application
> threads were stopped: 0.0864708 seconds, Stopping threads took: 0.0001602
> seconds
> 2019-09-18T13:41:38.079+0800: 120.320: [Full GC (Ergonomics) [PSYoungGen:
> 40960K->39772K(81920K)] [ParOldGen: 245683K->245683K(245760K)]
> 286643K->285455K(327680K), [Metaspace: 56313K->56313K(1099776K)], 0.0926346
> secs] [Times: user=0.20 sys=0.00, real=0.09 secs]
> 2019-09-18T13:41:38.171+0800: 120.413: Total time for which application
> threads were stopped: 0.0932214 seconds, Stopping threads took: 0.0001315
> seconds
> 2019-09-18T13:41:38.172+0800: 120.414: Total time for which application
> threads were stopped: 0.0003511 seconds, Stopping threads took: 0.0001082
> seconds
> 2019-09-18T13:41:38.177+0800: 120.418: [Full GC (Ergonomics) [PSYoungGen:
> 40960K->39661K(81920K)] [ParOldGen: 245683K->245683K(245760K)]
> 286643K->285344K(327680K), [Metaspace: 56313K->56313K(1099776K)], 0.0964601
> secs] [Times: user=0.21 sys=0.00, real=0.10 secs]
> 2019-09-18T13:41:38.273+0800: 120.515: Total time for which application
> threads were stopped: 0.0970543 seconds, Stopping threads took: 0.0001037
> seconds
> 2019-09-18T13:41:38.276+0800: 120.517: [Full GC (Ergonomics) [PSYoungGen:
> 40960K->39662K(81920K)] [ParOldGen: 245683K->245683K(245760K)]
> 286643K->285345K(327680K), [Metaspace: 56313K->56313K(1099776K)], 0.1040062
> secs] [Times: user=0.22 sys=0.00, real=0.11 secs]
> 2019-09-18T13:41:38.380+0800: 120.621: Total time for which application
> threads were stopped: 0.1046574 seconds, Stopping threads took: 0.0000903
> seconds
> 2019-09-18T13:41:38.382+0800: 120.624: [Full GC (Ergonomics) [PSYoungGen:
> 40960K->39663K(81920K)] [ParOldGen: 245683K->245683K(245760K)]
> 286643K->285346K(327680K), [Metaspace: 56313K->56313K(1099776K)], 0.0943451
> secs] [Times: user=0.19 sys=0.01, real=0.09 secs]
> 2019-09-18T13:41:38.477+0800: 120.718: Total time for which application
> threads were stopped: 0.0949320 seconds, Stopping threads took: 0.0000874
> seconds
> {code}
> {code:java}
>
> CommandLine flags: -XX:GCLogFileSize=10485760 -XX:+HeapDumpOnOutOfMemoryError
> -XX:HeapDumpPath=./flink-tm-heapdump.hprof -XX:InitialHeapSize=377487360
> -XX:MaxDirectMemorySize=696254464 -XX:MaxHeapSize=377487360
> {code}
>
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