Github user uce commented on the issue:

    https://github.com/apache/flink/pull/3059
  
    Since the comments were very minor I addressed them myself (used the 
backticks and skipped the change in "If checkpointing is activated..." as it 
didn't really improve anything).
    
    The work flow was as follows: I checked out your PR branch, rebased it onto 
master (via `git rebase apache/master`) and pushed it with another related 
commit. My related commit had a comment `This closes #3059`, which tells the 
ASF bot to close this PR. Then I cherry picked it to the 1.2 branch.
    
    GitHub only notices that the changes were merged for merges to master and 
if the commit hashes are not changed I think. Since I rebased they did change 
and I needed the manual close. Does this make sense?
    
    



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