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https://issues.apache.org/jira/browse/HBASE-3006?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12910351#action_12910351
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Kannan Muthukkaruppan commented on HBASE-3006:
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For our test case, min(16k, compressedSize) will be a no-op since our
compressed sizes were almost always smaller than 16k. In our internal
branch, we're planning to go with 64k. Thought, for large objects, 16k
batching might be too small. Will upload the new patch.
> Reading compressed HFile blocks causes way too many DFS RPC calls severly
> impacting performance
> -----------------------------------------------------------------------------------------------
>
> Key: HBASE-3006
> URL: https://issues.apache.org/jira/browse/HBASE-3006
> Project: HBase
> Issue Type: Bug
> Affects Versions: 0.89.20100621
> Reporter: Kannan Muthukkaruppan
> Assignee: Kannan Muthukkaruppan
> Priority: Critical
> Attachments: HBASE-3006.txt
>
>
> On some read perf tests, we noticed several perf outliers (10 second plus
> range). The rows were large (spanning multiple blocks, but still the numbers
> didn't add up). We had compression turned on.
> We enabled DN clienttrace logging,
> log4j.logger.org.apache.hadoop.hdfs.server.datanode.DataNode.clienttrace=DEBUG
> and noticed lots of 516 byte reads at the DN level, several of them at the
> same offset in the block.
> {code}
> 2010-09-16 09:28:32,335 INFO
> org.apache.hadoop.hdfs.server.datanode.DataNode.clienttrace: src:
> /10.30.251.189:50010, dest: /10.30.251.189:38713, bytes: 516, op: HDFS_READ,
> cliID: DFSClient_-436329957, offset: 39884800, srvID: DS-1757894045-10.3\
> 0.251.189-50010-1283993662994, blockid: blk_-4686540439725119008_1985,
> duration: 203000
> 2010-09-16 09:28:32,336 INFO
> org.apache.hadoop.hdfs.server.datanode.DataNode.clienttrace: src:
> /10.30.251.189:50010, dest: /10.30.251.189:40547, bytes: 516, op: HDFS_READ,
> cliID: DFSClient_-436329957, offset: 39884800, srvID: DS-1757894045-10.3\
> 0.251.189-50010-1283993662994, blockid: blk_-4686540439725119008_1985,
> duration: 119000
> 2010-09-16 09:28:32,337 INFO
> org.apache.hadoop.hdfs.server.datanode.DataNode.clienttrace: src:
> /10.30.251.189:50010, dest: /10.30.251.189:40650, bytes: 516, op: HDFS_READ,
> cliID: DFSClient_-436329957, offset: 39884800, srvID: DS-1757894045-10.3\
> 0.251.189-50010-1283993662994, blockid: blk_-4686540439725119008_1985,
> duration: 149000
> 2010-09-16 09:28:32,337 INFO
> org.apache.hadoop.hdfs.server.datanode.DataNode.clienttrace: src:
> /10.30.251.189:50010, dest: /10.30.251.189:40861, bytes: 516, op: HDFS_READ,
> cliID: DFSClient_-436329957, offset: 39884800, srvID: DS-1757894045-10.3\
> 0.251.189-50010-1283993662994, blockid: blk_-4686540439725119008_1985,
> duration: 135000
> 2010-09-16 09:28:32,338 INFO
> org.apache.hadoop.hdfs.server.datanode.DataNode.clienttrace: src:
> /10.30.251.189:50010, dest: /10.30.251.189:41129, bytes: 516, op: HDFS_READ,
> cliID: DFSClient_-436329957, offset: 39884800, srvID: DS-1757894045-10.3\
> 0.251.189-50010-1283993662994, blockid: blk_-4686540439725119008_1985,
> duration: 117000
> 2010-09-16 09:28:32,339 INFO
> org.apache.hadoop.hdfs.server.datanode.DataNode.clienttrace: src:
> /10.30.251.189:50010, dest: /10.30.251.189:41691, bytes: 516, op: HDFS_READ,
> cliID: DFSClient_-436329957, offset: 39884800, srvID: DS-1757894045-10.3\
> 0.251.189-50010-1283993662994, blockid: blk_-4686540439725119008_1985,
> duration: 148000
> 2010-09-16 09:28:32,339 INFO
> org.apache.hadoop.hdfs.server.datanode.DataNode.clienttrace: src:
> /10.30.251.189:50010, dest: /10.30.251.189:42881, bytes: 516, op: HDFS_READ,
> cliID: DFSClient_-436329957, offset: 39884800, srvID: DS-1757894045-10.3\
> 0.251.189-50010-1283993662994, blockid: blk_-4686540439725119008_1985,
> duration: 114000
> 2010-09-16 09:28:32,341 INFO
> org.apache.hadoop.hdfs.server.datanode.DataNode.clienttrace: src:
> /10.30.251.189:50010, dest: /10.30.251.189:49511, bytes: 516, op: HDFS_READ,
> cliID: DFSClient_-436329957, offset: 39884800, srvID: DS-1757894045-10.3\
> 0.251.189-50010-1283993662994, blockid: blk_-4686540439725119008_1985,
> duration: 153000
> 2010-09-16 09:28:32,342 INFO
> org.apache.hadoop.hdfs.server.datanode.DataNode.clienttrace: src:
> /10.30.251.189:50010, dest: /10.30.251.189:51158, bytes: 3096, op: HDFS_READ,
> cliID: DFSClient_-436329957, offset: 39884800, srvID: DS-1757894045-10.\
> 30.251.189-50010-1283993662994, blockid: blk_-4686540439725119008_1985,
> duration: 139000
> {code}
> This was strange coz our block size was 64k, and on disk block size after
> compression should generally have been around 6k.
> Some print debugging at the HFile and BoundedRangeFileInputStream (which is
> wrapped by createDecompressionStream) revealed the following:
> We are trying to read 20k from DFS @ HFile layer. The
> BounderRangeFileInputStream instead reads several header bytes 1 byte at a
> time, and then reads a 11k chunk and later a 9k chunk.
> {code}
> 2010-09-16 09:21:27,912 INFO org.apache.hadoop.hbase.io.hfile.HFile: ### fs
> read @ offset = 34386760 compressedSize = 20711 decompressedSize = 92324
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34386760; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34386761; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34386762; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34386763; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34386764; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34386765; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34386766; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34386767; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34386768; bytes: 11005
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34397773; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34397774; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34397775; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34397776; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34397777; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34397778; bytes: 1
> 2010-09-16 09:21:27,912 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34397779; bytes: 1
> 2010-09-16 09:21:27,913 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34397780; bytes: 1
> 2010-09-16 09:21:27,913 INFO
> org.apache.hadoop.hbase.io.hfile.BoundedRangeFileInputStream: ### seeking to
> reading @ 34397781; bytes: 9690
> {code}
> Seems like it should be an easy fix to prefetch the compressed size... rather
> than incremental fetches.
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