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https://issues.apache.org/jira/browse/HBASE-1212?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13002375#comment-13002375
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ryan rawson commented on HBASE-1212:
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now that we dont key files by their sequence id in Store.java, this is simpler: 
just allow duplicate sequence ids.

> merge tool expects regions all have different sequence ids
> ----------------------------------------------------------
>
>                 Key: HBASE-1212
>                 URL: https://issues.apache.org/jira/browse/HBASE-1212
>             Project: HBase
>          Issue Type: Bug
>            Reporter: stack
>
> Currently merging two regions, the merge tool will compare their sequence 
> ids.  If same, it will decrement one.  It needs to do this because on region 
> open, files are keyed by their sequenceid; if two the same, one will erase 
> the other.
> Well, with the move to the aggregating hfile format, the sequenceid is 
> written when the file is created and its no longer written into an aside file 
> but as metadata on to the end of the file.  Changing the sequenceid is no 
> longer an option.
> This issue is about figuring a solution for the rare case where two store 
> files have same sequence id AND we want to merge the two regions.

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