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https://issues.apache.org/jira/browse/HBASE-13418?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14505410#comment-14505410
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Esteban Gutierrez commented on HBASE-13418:
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Are you using the features added in HDFS-3703 to skip stale DNs? If this is
happening when killing most of the DNs I think is expected for the RS to enter
into a long PENDING_CLOSE (and also during other states) until the HDFS
pipeline can be reconstructed. So depending for how long the DNs were down this
should or shouldn't have recovered.
> Regions getting stuck in PENDING_CLOSE state infinitely in high load HA
> scenarios
> ---------------------------------------------------------------------------------
>
> Key: HBASE-13418
> URL: https://issues.apache.org/jira/browse/HBASE-13418
> Project: HBase
> Issue Type: Bug
> Affects Versions: 0.98.10
> Reporter: Vikas Vishwakarma
>
> In some heavy data load cases when there are multiple RegionServers going
> up/down (HA) or when we try to shutdown/restart the entire HBase cluster, we
> are observing that some regions are getting stuck in PENDING_CLOSE state
> infinitely.
> On going through the logs for a particular region stuck in PENDING_CLOSE
> state, it looks like for this region two memstore flush got triggered within
> few milliseconds as given below and after sometime there is Unrecoverable
> exception while closing region. I am suspecting this could be some kind of
> race condition but need to check further
> Logs:
> ================
> ......
> 2015-04-06 11:47:33,309 INFO [2,queue=0,port=60020]
> regionserver.HRegionServer - Close 884fd5819112370d9a9834895b0ec19c, via
> zk=yes, znode version=0, on
> blitzhbase01-dnds1-4-crd.eng.sfdc.net,60020,1428318111711
> 2015-04-06 11:47:33,309 DEBUG [-dnds3-4-crd:60020-0]
> handler.CloseRegionHandler - Processing close of
> RMHA_1,\x04\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00,1428318937003.884fd5819112370d9a9834895b0ec19c.
> 2015-04-06 11:47:33,319 DEBUG [-dnds3-4-crd:60020-0] regionserver.HRegion -
> Closing
> RMHA_1,\x04\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00,1428318937003.884fd5819112370d9a9834895b0ec19c.:
> disabling compactions & flushes
> 2015-04-06 11:47:33,319 INFO [-dnds3-4-crd:60020-0] regionserver.HRegion -
> Running close preflush of
> RMHA_1,\x04\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00,1428318937003.884fd5819112370d9a9834895b0ec19c.
> 2015-04-06 11:47:33,319 INFO [-dnds3-4-crd:60020-0] regionserver.HRegion -
> Started memstore flush for
> RMHA_1,\x04\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00,1428318937003.884fd5819112370d9a9834895b0ec19c.,
> current region memstore size 70.0 M
> 2015-04-06 11:47:33,327 DEBUG [-dnds3-4-crd:60020-0] regionserver.HRegion -
> Updates disabled for region
> RMHA_1,\x04\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00,1428318937003.884fd5819112370d9a9834895b0ec19c.
> 2015-04-06 11:47:33,328 INFO [-dnds3-4-crd:60020-0] regionserver.HRegion -
> Started memstore flush for
> RMHA_1,\x04\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00,1428318937003.884fd5819112370d9a9834895b0ec19c.,
> current region memstore size 70.0 M
> 2015-04-06 11:47:33,328 WARN [-dnds3-4-crd:60020-0] wal.FSHLog - Couldn't
> find oldest seqNum for the region we are about to flush:
> [884fd5819112370d9a9834895b0ec19c]
> 2015-04-06 11:47:33,328 WARN [-dnds3-4-crd:60020-0] regionserver.MemStore -
> Snapshot called again without clearing previous. Doing nothing. Another
> ongoing flush or did we fail last attempt?
> 2015-04-06 11:47:33,334 FATAL [-dnds3-4-crd:60020-0]
> regionserver.HRegionServer - ABORTING region server
> blitzhbase01-dnds3-4-crd.eng.sfdc.net,60020,1428318082860: Unrecoverable
> exception while closing region
> RMHA_1,\x04\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00,1428318937003.884fd5819112370d9a9834895b0ec19c.,
> still finishing close
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