Jerry He commented on HBASE-16647:

The error state gets cleared in later stages after the move of 
offlineReferenceFileRepair to the beginning.
Will fix the test.
Thanks, Ted.

> hbck should do offline reference repair before online repair
> ------------------------------------------------------------
>                 Key: HBASE-16647
>                 URL: https://issues.apache.org/jira/browse/HBASE-16647
>             Project: HBase
>          Issue Type: Bug
>            Reporter: Jerry He
>            Assignee: Jerry He
>         Attachments: HBASE-16647.patch
> {noformat}
> hbck
> -fixReferenceFiles  Try to offline lingering reference store files
> Metadata Repair shortcuts
> -repair    Shortcut for -fixAssignments -fixMeta -fixHdfsHoles 
> -fixHdfsOrphans -fixHdfsOverlaps -fixVersionFile -sidelineBigOverlaps 
> -fixReferenceFiles -fixTableLocks -fixOrphanedTableZnodes
> {noformat}
> Bad reference files prevent the region from coming online.
> If used in the shortcut combination, the reference files should be fixed 
> before other online fix.
> I have seen repeated '-repair' did not work because bad reference files 
> failed regions.

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