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https://issues.apache.org/jira/browse/HBASE-17069?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15877228#comment-15877228
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Andrew Purtell edited comment on HBASE-17069 at 2/22/17 1:39 AM:
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bq. So you think it good in branch-1.2, branch-1.3 but not branch-1 Andrew
Purtell?
I think this isn't completely solved and that surfaces in branch-1. Not sure at
this point if that is the only affected branch. My guess is there is common
code between them all that needs adjusting, to do with merging.
bq. Interesting we were focused on locking but it seems like the issue
something else altogether but it was in the locking patch.... Dang.
Yeah I spent a while looking at locking... but Abhishek got us pointed in the
right direction, thankfully.
was (Author: apurtell):
bq. So you think it good in branch-1.2, branch-1.3 but not branch-1 Andrew
Purtell?
I think this isn't completely solved and that surfaces in branch-1. Not sure at
this point if that is the only affected branch. My guess is there is common
code between them all that needs adjusting, to do with merging.
> RegionServer writes invalid META entries for split daughters in some
> circumstances
> ----------------------------------------------------------------------------------
>
> Key: HBASE-17069
> URL: https://issues.apache.org/jira/browse/HBASE-17069
> Project: HBase
> Issue Type: Bug
> Components: wal
> Affects Versions: 2.0.0, 1.3.0, 1.4.0, 1.2.4
> Reporter: Andrew Purtell
> Assignee: Abhishek Singh Chouhan
> Priority: Blocker
> Fix For: 2.0.0, 1.4.0, 1.3.1, 1.2.5
>
> Attachments: daughter_1_d55ef81c2f8299abbddfce0445067830.log,
> daughter_2_08629d59564726da2497f70451aafcdb.log,
> HBASE-17069.branch-1.3.001.patch, HBASE-17069.branch-1.3.002.patch,
> HBASE-17069.master.001.patch, logs.tar.gz,
> parent-393d2bfd8b1c52ce08540306659624f2.log
>
>
> I have been seeing frequent ITBLL failures testing various versions of 1.2.x.
> Over the lifetime of 1.2.x the following issues have been fixed:
> - HBASE-15315 (Remove always set super user call as high priority)
> - HBASE-16093 (Fix splits failed before creating daughter regions leave meta
> inconsistent)
> And this one is pending:
> - HBASE-17044 (Fix merge failed before creating merged region leaves meta
> inconsistent)
> I can apply all of the above to branch-1.2 and still see this failure:
> *The life of stillborn region d55ef81c2f8299abbddfce0445067830*
> *Master sees SPLITTING_NEW*
> {noformat}
> 2016-11-08 04:23:21,186 INFO [AM.ZK.Worker-pool2-t82] master.RegionStates:
> Transition null to {d55ef81c2f8299abbddfce0445067830 state=SPLITTING_NEW,
> ts=1478579001186, server=node-3.cluster,16020,1478578389506}
> {noformat}
> *The RegionServer creates it*
> {noformat}
> 2016-11-08 04:23:26,035 INFO
> [StoreOpener-d55ef81c2f8299abbddfce0445067830-1] hfile.CacheConfig: Created
> cacheConfig for GomnU: blockCache=LruBlockCache{blockCount=34,
> currentSize=14996112, freeSize=12823716208, maxSize=12838712320,
> heapSize=14996112, minSize=12196776960, minFactor=0.95, multiSize=6098388480,
> multiFactor=0.5, singleSize=3049194240, singleFactor=0.25},
> cacheDataOnRead=true, cacheDataOnWrite=false, cacheIndexesOnWrite=false,
> cacheBloomsOnWrite=false, cacheEvictOnClose=false, cacheDataCompressed=false,
> prefetchOnOpen=false
> 2016-11-08 04:23:26,038 INFO
> [StoreOpener-d55ef81c2f8299abbddfce0445067830-1] hfile.CacheConfig: Created
> cacheConfig for big: blockCache=LruBlockCache{blockCount=34,
> currentSize=14996112, freeSize=12823716208, maxSize=12838712320,
> heapSize=14996112, minSize=12196776960, minFactor=0.95, multiSize=6098388480,
> multiFactor=0.5, singleSize=3049194240, singleFactor=0.25},
> cacheDataOnRead=true, cacheDataOnWrite=false, cacheIndexesOnWrite=false,
> cacheBloomsOnWrite=false, cacheEvictOnClose=false, cacheDataCompressed=false,
> prefetchOnOpen=false
> 2016-11-08 04:23:26,442 INFO
> [StoreOpener-d55ef81c2f8299abbddfce0445067830-1] hfile.CacheConfig: Created
> cacheConfig for meta: blockCache=LruBlockCache{blockCount=63,
> currentSize=17187656, freeSize=12821524664, maxSize=12838712320,
> heapSize=17187656, minSize=12196776960, minFactor=0.95, multiSize=6098388480,
> multiFactor=0.5, singleSize=3049194240, singleFactor=0.25},
> cacheDataOnRead=true, cacheDataOnWrite=false, cacheIndexesOnWrite=false,
> cacheBloomsOnWrite=false, cacheEvictOnClose=false, cacheDataCompressed=false,
> prefetchOnOpen=false
> 2016-11-08 04:23:26,713 INFO
> [StoreOpener-d55ef81c2f8299abbddfce0445067830-1] hfile.CacheConfig: Created
> cacheConfig for nwmrW: blockCache=LruBlockCache{blockCount=96,
> currentSize=19178440, freeSize=12819533880, maxSize=12838712320,
> heapSize=19178440, minSize=12196776960, minFactor=0.95, multiSize=6098388480,
> multiFactor=0.5, singleSize=3049194240, singleFactor=0.25},
> cacheDataOnRead=true, cacheDataOnWrite=false, cacheIndexesOnWrite=false,
> cacheBloomsOnWrite=false, cacheEvictOnClose=false, cacheDataCompressed=false,
> prefetchOnOpen=false
> 2016-11-08 04:23:26,715 INFO
> [StoreOpener-d55ef81c2f8299abbddfce0445067830-1] hfile.CacheConfig: Created
> cacheConfig for piwbr: blockCache=LruBlockCache{blockCount=96,
> currentSize=19178440, freeSize=12819533880, maxSize=12838712320,
> heapSize=19178440, minSize=12196776960, minFactor=0.95, multiSize=6098388480,
> multiFactor=0.5, singleSize=3049194240, singleFactor=0.25},
> cacheDataOnRead=true, cacheDataOnWrite=false, cacheIndexesOnWrite=false,
> cacheBloomsOnWrite=false, cacheEvictOnClose=false, cacheDataCompressed=false,
> prefetchOnOpen=false
> 2016-11-08 04:23:26,717 INFO
> [StoreOpener-d55ef81c2f8299abbddfce0445067830-1] hfile.CacheConfig: Created
> cacheConfig for tiny: blockCache=LruBlockCache{blockCount=96,
> currentSize=19178440, freeSize=12819533880, maxSize=12838712320,
> heapSize=19178440, minSize=12196776960, minFactor=0.95, multiSize=6098388480,
> multiFactor=0.5, singleSize=3049194240, singleFactor=0.25},
> cacheDataOnRead=true, cacheDataOnWrite=false, cacheIndexesOnWrite=false,
> cacheBloomsOnWrite=false, cacheEvictOnClose=false, cacheDataCompressed=false,
> prefetchOnOpen=false
> {noformat}
> *The RegionServer onlines it*
> {noformat}
> 2016-11-08 04:23:27,015 INFO
> [node-3.cluster,16020,1478578389506-daughterOpener=d55ef81c2f8299abbddfce0445067830]
> regionserver.HRegion: Onlined d55ef81c2f8299abbddfce0445067830; next
> sequenceid=19184
> 2016-11-08 04:23:27,029 INFO
> [regionserver/node-3.cluster/192.168.124.4:16020-splits-1478579001099]
> regionserver.HRegionServer: Post open deploy tasks for
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830.
> 2016-11-08 04:23:27,047 INFO
> [regionserver/node-3.cluster/192.168.124.4:16020-splits-1478579001099]
> hbase.MetaTableAccessor: Updated row
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830.
> with server=node-3.cluster,16020,1478578389506
> {noformat}
> *The Master transitions state from SPLITTING_NEW to OPEN*
> {noformat}
> 2016-11-08 04:23:27,058 INFO [AM.ZK.Worker-pool2-t84] master.RegionStates:
> Transition {d55ef81c2f8299abbddfce0445067830 state=SPLITTING_NEW,
> ts=1478579007057, server=node-3.cluster,16020,1478578389506} to
> {d55ef81c2f8299abbddfce0445067830 state=OPEN, ts=1478579007058,
> server=node-3.cluster,16020,1478578389506}
> 2016-11-08 04:23:27,059 INFO [AM.ZK.Worker-pool2-t84]
> master.AssignmentManager: Handled SPLIT event;
> parent=IntegrationTestBigLinkedList,,1478577020916.393d2bfd8b1c52ce08540306659624f2.,
> daughter
> a=IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830.,
> daughter
> b=IntegrationTestBigLinkedList,/\xFB\x14,1478579001155.08629d59564726da2497f70451aafcdb.,
> on node-3.cluster,16020,1478578389506
> {noformat}
> *RegionServer updates META - BUT APPARENTLY NOT CORRECTLY*
> {noformat}
> 2016-11-08 04:23:27,165 INFO
> [regionserver/node-3.cluster/192.168.124.4:16020-splits-1478579001099]
> regionserver.SplitRequest: Region split, hbase:meta updated, and report to
> master.
> Parent=IntegrationTestBigLinkedList,,1478577020916.393d2bfd8b1c52ce08540306659624f2.,
> new regions:
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830.,
>
> IntegrationTestBigLinkedList,/\xFB\x14,1478579001155.08629d59564726da2497f70451aafcdb..
> Split took 6sec
> {noformat}
> *RegionServer delays flush*
> (Is this important?)
> {noformat}
> 2016-11-08 04:24:14,639 WARN [MemStoreFlusher.0]
> regionserver.MemStoreFlusher: Region
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830.
> has too many store files; delaying flush up to 90000ms
> {noformat}
> *Immediate warnings about No serialized HRegionInfo*
> {noformat}
> 2016-11-08 04:24:44,691 WARN
> [B.defaultRpcServer.handler=26,queue=2,port=16000] hbase.MetaTableAccessor:
> No serialized HRegionInfo in
> keyvalues={IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:seqnumDuringOpen/1478579007029/Put/vlen=8/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:server/1478579007029/Put/vlen=20/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:serverstartcode/1478579007029/Put/vlen=8/seqid=0}
> {noformat}
> *Master is not happy either*
> {noformat}
> 2016-11-08 04:24:51,148 WARN [MASTER_TABLE_OPERATIONS-node-1:16000-0]
> hbase.MetaTableAccessor: No serialized HRegionInfo in
> keyvalues={IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:seqnumDuringOpen/1478579007029/Put/vlen=8/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:server/1478579007029/Put/vlen=20/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:serverstartcode/1478579007029/Put/vlen=8/seqid=0}
> {noformat}
> *TestRunner MetaScanner complains about invalid entries in META missing
> HRegionInfo*
> {noformat}
> (standard input):9086:2016-11-08 05:04:17,230 WARN
> [B.defaultRpcServer.handler=4,queue=1,port=16000] hbase.MetaTableAccessor: No
> serialized HRegionInfo in
> keyvalues={IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:seqnumDuringOpen/1478581041080/Put/vlen=8/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:server/1478581041080/Put/vlen=20/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:serverstartcode/1478581041080/Put/vlen=8/seqid=0}
> {noformat}
> *ITBLL MapReduce tasks fail because part of the keyspace cannot be located:*
> {noformat}
> java.io.IOException: HRegionInfo was null in IntegrationTestBigLinkedList,
> row=keyvalues={IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:seqnumDuringOpen/1478581041080/Put/vlen=8/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:server/1478581041080/Put/vlen=20/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:serverstartcode/1478581041080/Put/vlen=8/seqid=0}
> at
> org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.locateRegionInMeta(ConnectionManager.java:1293)
> at
> org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.locateRegion(ConnectionManager.java:1185)
> at
> org.apache.hadoop.hbase.client.AsyncProcess.submit(AsyncProcess.java:410)
> at
> org.apache.hadoop.hbase.client.AsyncProcess.submit(AsyncProcess.java:359)
> at
> org.apache.hadoop.hbase.client.BufferedMutatorImpl.backgroundFlushCommits(BufferedMutatorImpl.java:238)
> at
> org.apache.hadoop.hbase.client.BufferedMutatorImpl.mutate(BufferedMutatorImpl.java:154)
> at
> org.apache.hadoop.hbase.client.BufferedMutatorImpl.mutate(BufferedMutatorImpl.java:121)
> at
> org.apache.hadoop.hbase.test.IntegrationTestBigLinkedList$Generator$GeneratorMapper.persist(IntegrationTestBigLinkedList.java:486)
> at
> org.apache.hadoop.hbase.test.IntegrationTestBigLinkedList$Generator$GeneratorMapper.map(IntegrationTestBigLinkedList.java:431)
> at
> org.apache.hadoop.hbase.test.IntegrationTestBigLinkedList$Generator$GeneratorMapper.map(IntegrationTestBigLinkedList.java:375)
> at org.apache.hadoop.mapreduce.Mapper.run(Mapper.java:146)
> at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:787)
> at org.apache.hadoop.mapred.MapTask.run(MapTask.java:341)
> at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:170)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:422)
> at
> org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1719)
> at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:164)
> {noformat}
> {noformat}
> ./application_1478574724776_0002/container_1478574724776_0002_01_000008/syslog:920:java.io.IOException:
> HRegionInfo was null in IntegrationTestBigLinkedList,
> row=keyvalues={IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:seqnumDuringOpen/1478580288482/Put/vlen=8/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:server/1478580288482/Put/vlen=20/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:serverstartcode/1478580288482/Put/vlen=8/seqid=0}
> {noformat}
> {noformat}
> ./application_1478574724776_0002/container_1478574724776_0002_01_000010/syslog:920:java.io.IOException:
> HRegionInfo was null in IntegrationTestBigLinkedList,
> row=keyvalues={IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:seqnumDuringOpen/1478580288482/Put/vlen=8/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:server/1478580288482/Put/vlen=20/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:serverstartcode/1478580288482/Put/vlen=8/seqid=0}
> {noformat}
> {noformat}
> ./application_1478574724776_0002/container_1478574724776_0002_01_000011/syslog:909:java.io.IOException:
> HRegionInfo was null in IntegrationTestBigLinkedList,
> row=keyvalues={IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:seqnumDuringOpen/1478580288482/Put/vlen=8/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:server/1478580288482/Put/vlen=20/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:serverstartcode/1478580288482/Put/vlen=8/seqid=0}
> {noformat}
> {noformat}
> ./application_1478574724776_0002/container_1478574724776_0002_01_000030/syslog:48:java.io.IOException:
> HRegionInfo was null in IntegrationTestBigLinkedList,
> row=keyvalues={IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:seqnumDuringOpen/1478581041080/Put/vlen=8/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:server/1478581041080/Put/vlen=20/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:serverstartcode/1478581041080/Put/vlen=8/seqid=0}
> {noformat}
> {noformat}
> ./application_1478574724776_0002/container_1478574724776_0002_01_000048/syslog:48:java.io.IOException:
> HRegionInfo was null in IntegrationTestBigLinkedList,
> row=keyvalues={IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:seqnumDuringOpen/1478581041080/Put/vlen=8/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:server/1478581041080/Put/vlen=20/seqid=0,
>
> IntegrationTestBigLinkedList,,1478579001155.d55ef81c2f8299abbddfce0445067830./info:serverstartcode/1478581041080/Put/vlen=8/seqid=0}
> {noformat}
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