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https://jira.codehaus.org/browse/MECLIPSE-745?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=345891#comment-345891
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Tom Helpstone commented on MECLIPSE-745:
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Well, it does not (re)create the .project and .classpath also. See 
[MECLIPSE-659|http://jira.codehaus.org/browse/MECLIPSE-659].
-> Eclipse integration does not work for a project with an aggregate.

My workaround is to import the project with "Import Maven Projects" with 
marking _all_ pom.xml's. The result is a eclipse setup with a build path, which 
includes the library dependencies coming from maven.

> eclipse:clean not deleting all .project and .settings files (for packaging = 
> pom)
> ---------------------------------------------------------------------------------
>
>                 Key: MECLIPSE-745
>                 URL: https://jira.codehaus.org/browse/MECLIPSE-745
>             Project: Maven Eclipse Plugin
>          Issue Type: Bug
>          Components: M2Eclipse support
>    Affects Versions: 2.9
>         Environment: All
>            Reporter: Morten Christensen
>
> Related to MECLIPSE-731, I have found out that both .project and .settings 
> files are not deleted for pom type maven projects 
> (packaging>pom</packaging>). For other kind of maven projects only .settings 
> files are not deleted currently.



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