gh-yzou commented on code in PR #1287:
URL: https://github.com/apache/polaris/pull/1287#discussion_r2055041215


##########
extension/persistence/relational-jdbc/src/main/java/org/apache/polaris/extension/persistence/relational/jdbc/QueryGenerator.java:
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@@ -0,0 +1,267 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.polaris.extension.persistence.relational.jdbc;
+
+import com.google.common.annotations.VisibleForTesting;
+import jakarta.annotation.Nonnull;
+import java.lang.reflect.Field;
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Locale;
+import java.util.Map;
+import java.util.regex.Matcher;
+import java.util.regex.Pattern;
+import org.apache.polaris.core.entity.PolarisEntityCore;
+import org.apache.polaris.core.entity.PolarisEntityId;
+import 
org.apache.polaris.extension.persistence.relational.jdbc.models.ModelEntity;
+import 
org.apache.polaris.extension.persistence.relational.jdbc.models.ModelGrantRecord;
+import 
org.apache.polaris.extension.persistence.relational.jdbc.models.ModelPrincipalAuthenticationData;
+
+public class QueryGenerator {

Review Comment:
   I in general encourage to add a comments with examples to help the developer 
to have a general sense of the expected result before start dig into the code. 
For example, for this genereateSelectQuery, the Map<String, Object> whereClause 
is used to generate equivalent conditions, which is not obvious when looking at 
the function. And is the select query generated going to be just a select * 
from xxx or select columns from xxxx, and why it is not a direct select * etc. 
What my understanding why we do not using select * is because the schema 
includes realm_id, which is not part of entity. i think all those information 
are useful information that we can add at comment to help future maintaince.



##########
extension/persistence/relational-jdbc/src/main/java/org/apache/polaris/extension/persistence/relational/jdbc/JdbcBasePersistenceImpl.java:
##########
@@ -0,0 +1,752 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.polaris.extension.persistence.relational.jdbc;
+
+import static 
org.apache.polaris.extension.persistence.relational.jdbc.QueryGenerator.*;
+
+import jakarta.annotation.Nonnull;
+import jakarta.annotation.Nullable;
+import java.sql.SQLException;
+import java.util.ArrayList;
+import java.util.Collections;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.function.Function;
+import java.util.function.Predicate;
+import java.util.stream.Collectors;
+import org.apache.polaris.core.PolarisCallContext;
+import org.apache.polaris.core.entity.EntityNameLookupRecord;
+import org.apache.polaris.core.entity.PolarisBaseEntity;
+import org.apache.polaris.core.entity.PolarisChangeTrackingVersions;
+import org.apache.polaris.core.entity.PolarisEntityCore;
+import org.apache.polaris.core.entity.PolarisEntityId;
+import org.apache.polaris.core.entity.PolarisEntityType;
+import org.apache.polaris.core.entity.PolarisGrantRecord;
+import org.apache.polaris.core.entity.PolarisPrincipalSecrets;
+import org.apache.polaris.core.persistence.BaseMetaStoreManager;
+import org.apache.polaris.core.persistence.BasePersistence;
+import org.apache.polaris.core.persistence.EntityAlreadyExistsException;
+import org.apache.polaris.core.persistence.IntegrationPersistence;
+import org.apache.polaris.core.persistence.PrincipalSecretsGenerator;
+import org.apache.polaris.core.persistence.RetryOnConcurrencyException;
+import org.apache.polaris.core.storage.PolarisStorageConfigurationInfo;
+import org.apache.polaris.core.storage.PolarisStorageIntegration;
+import org.apache.polaris.core.storage.PolarisStorageIntegrationProvider;
+import 
org.apache.polaris.extension.persistence.relational.jdbc.models.ModelEntity;
+import 
org.apache.polaris.extension.persistence.relational.jdbc.models.ModelGrantRecord;
+import 
org.apache.polaris.extension.persistence.relational.jdbc.models.ModelPrincipalAuthenticationData;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+public class JdbcBasePersistenceImpl implements BasePersistence, 
IntegrationPersistence {
+
+  private static final Logger LOGGER = 
LoggerFactory.getLogger(JdbcBasePersistenceImpl.class);
+
+  private final DatasourceOperations datasourceOperations;
+  private final PrincipalSecretsGenerator secretsGenerator;
+  private final PolarisStorageIntegrationProvider storageIntegrationProvider;
+  private final String realmId;
+
+  public JdbcBasePersistenceImpl(
+      DatasourceOperations databaseOperations,
+      PrincipalSecretsGenerator secretsGenerator,
+      PolarisStorageIntegrationProvider storageIntegrationProvider,
+      String realmId) {
+    this.datasourceOperations = databaseOperations;
+    this.secretsGenerator = secretsGenerator;
+    this.storageIntegrationProvider = storageIntegrationProvider;
+    this.realmId = realmId;
+  }
+
+  @Override
+  public long generateNewId(@Nonnull PolarisCallContext callCtx) {
+    return IdGenerator.getIdGenerator().nextId();
+  }
+
+  @Override
+  public void writeEntity(
+      @Nonnull PolarisCallContext callCtx,
+      @Nonnull PolarisBaseEntity entity,
+      boolean nameOrParentChanged,
+      PolarisBaseEntity originalEntity) {
+    ModelEntity modelEntity = ModelEntity.fromEntity(entity);
+    String query;
+    if (originalEntity == null) {
+      try {
+        query = generateInsertQuery(modelEntity, realmId);
+        datasourceOperations.executeUpdate(query);
+      } catch (SQLException e) {
+        if ((datasourceOperations.isConstraintViolation(e)
+            || datasourceOperations.isAlreadyExistsException(e))) {
+          throw new EntityAlreadyExistsException(entity);
+        } else {
+          throw new RuntimeException(
+              String.format("Failed to write entity due to %s", 
e.getMessage()));
+        }
+      }
+    } else {
+      Map<String, Object> params =
+          Map.of(
+              "id",
+              originalEntity.getId(),
+              "catalog_id",
+              originalEntity.getCatalogId(),
+              "entity_version",
+              originalEntity.getEntityVersion(),
+              "realm_id",
+              realmId);
+      query = generateUpdateQuery(modelEntity, params);
+      try {
+        int rowsUpdated = datasourceOperations.executeUpdate(query);
+        if (rowsUpdated == 0) {
+          throw new RetryOnConcurrencyException(
+              "Entity '%s' id '%s' concurrently modified; expected version %s",
+              entity.getName(), entity.getId(), 
originalEntity.getEntityVersion());
+        }
+      } catch (SQLException e) {
+        throw new RuntimeException(
+            String.format("Failed to write entity due to %s", e.getMessage()));
+      }
+    }
+  }
+
+  @Override
+  public void writeEntities(
+      @Nonnull PolarisCallContext callCtx,
+      @Nonnull List<PolarisBaseEntity> entities,
+      List<PolarisBaseEntity> originalEntities) {
+    try {
+      datasourceOperations.runWithinTransaction(
+          statement -> {
+            for (int i = 0; i < entities.size(); i++) {
+              PolarisBaseEntity entity = entities.get(i);
+              ModelEntity modelEntity = ModelEntity.fromEntity(entity);
+
+              // first, check if the entity has already been created, in which 
case we will simply
+              // return it.
+              PolarisBaseEntity entityFound =
+                  lookupEntity(
+                      callCtx, entity.getCatalogId(), entity.getId(), 
entity.getTypeCode());
+              if (entityFound != null) {
+                // probably the client retried, simply return it
+                // TODO: Check correctness of returning entityFound vs entity 
here. It may have
+                // already been updated after the creation.
+                continue;
+              }
+              // lookup by name
+              EntityNameLookupRecord exists =
+                  lookupEntityIdAndSubTypeByName(
+                      callCtx,
+                      entity.getCatalogId(),
+                      entity.getParentId(),
+                      entity.getTypeCode(),
+                      entity.getName());
+              if (exists != null) {
+                throw new EntityAlreadyExistsException(entity);
+              }
+              String query;
+              if (originalEntities == null || originalEntities.get(i) == null) 
{
+                try {
+                  query = generateInsertQuery(modelEntity, realmId);
+                  statement.executeUpdate(query);
+                } catch (SQLException e) {
+                  if ((datasourceOperations.isConstraintViolation(e)
+                      || datasourceOperations.isAlreadyExistsException(e))) {
+                    throw new EntityAlreadyExistsException(entity);
+                  } else {
+                    throw new RuntimeException(
+                        String.format("Failed to write entity due to %s", 
e.getMessage()));
+                  }
+                }
+              } else {
+                Map<String, Object> params =
+                    Map.of(
+                        "id",
+                        originalEntities.get(i).getId(),
+                        "catalog_id",
+                        originalEntities.get(i).getCatalogId(),
+                        "entity_version",
+                        originalEntities.get(i).getEntityVersion(),
+                        "realm_id",
+                        realmId);
+                query = generateUpdateQuery(modelEntity, params);
+                try {
+                  int rowsUpdated = statement.executeUpdate(query);
+                  if (rowsUpdated == 0) {
+                    throw new RetryOnConcurrencyException(
+                        "Entity '%s' id '%s' concurrently modified; expected 
version %s",
+                        entity.getName(),
+                        entity.getId(),
+                        originalEntities.get(i).getEntityVersion());
+                  }
+                } catch (SQLException e) {
+                  throw new RuntimeException(
+                      String.format("Failed to write entity due to %s", 
e.getMessage()));

Review Comment:
   I think that is a good idea,  but i think might be good to do it in a follow 
up pr, so that we can have a small nice scoped PR that focus on handling 
RuntimeException caused by SQL exception



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