Wei Chen created SPARK-14827:
--------------------------------
Summary: Spark SQL run on Hive table reports The specified
datastore driver ("com.mysql.jdbc.Driver") was not found in the CLASSPATH.
Key: SPARK-14827
URL: https://issues.apache.org/jira/browse/SPARK-14827
Project: Spark
Issue Type: Question
Components: SQL, YARN
Affects Versions: 1.5.2
Environment: Hadoop-YARN 2.6.0 Spark-1.5.2 Hive-2.0.0
Reporter: Wei Chen
I have set up a YARN cluste and Hive. Hive uses mysql as its metadata store.
Hive works fine with MR engine. But when I ran Spark SQL on a table that was
already created before use following command:
./spark-sql --master yarn --database hivedb -f tpch_query1
The error message is like:
WARN Connection: BoneCP specified but not present in CLASSPATH (or one of
dependencies)
Exception in thread "main" java.lang.RuntimeException:
java.lang.RuntimeException: Unable to instantiate
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:522)
at
org.apache.spark.sql.hive.client.ClientWrapper.<init>(ClientWrapper.scala:171)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
at
org.apache.spark.sql.hive.client.IsolatedClientLoader.liftedTree1$1(IsolatedClientLoader.scala:183)
at
org.apache.spark.sql.hive.client.IsolatedClientLoader.<init>(IsolatedClientLoader.scala:179)
at
org.apache.spark.sql.hive.HiveContext.metadataHive$lzycompute(HiveContext.scala:226)
at
org.apache.spark.sql.hive.HiveContext.metadataHive(HiveContext.scala:185)
at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:392)
at
org.apache.spark.sql.hive.HiveContext.defaultOverrides(HiveContext.scala:174)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:177)
at
org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:58)
at
org.apache.spark.sql.hive.thriftserver.SparkSQLCLIDriver.<init>(SparkSQLCLIDriver.scala:267)
at
org.apache.spark.sql.hive.thriftserver.SparkSQLCLIDriver$.main(SparkSQLCLIDriver.scala:139)
at
org.apache.spark.sql.hive.thriftserver.SparkSQLCLIDriver.main(SparkSQLCLIDriver.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at
org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:674)
at
org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:180)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:205)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:120)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.RuntimeException: Unable to instantiate
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1523)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
... 25 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
... 31 more
Caused by: javax.jdo.JDOFatalInternalException: Error creating transactional
connection factory
NestedThrowables:
java.lang.reflect.InvocationTargetException
at
org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:587)
at
org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:788)
at
org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at
org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at
org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
... 36 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
at
org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at
org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:325)
at
org.datanucleus.store.AbstractStoreManager.registerConnectionFactory(AbstractStoreManager.java:282)
at
org.datanucleus.store.AbstractStoreManager.<init>(AbstractStoreManager.java:240)
at
org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:286)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
at
org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at
org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at
org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at
org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
... 65 more
Caused by: org.datanucleus.exceptions.NucleusException: Attempt to invoke the
"DBCP" plugin to create a ConnectionPool gave an error : The specified
datastore driver ("com.mysql.jdbc.Driver") was not found in the CLASSPATH.
Please check your CLASSPATH specification, and the name of the driver.
at
org.datanucleus.store.rdbms.ConnectionFactoryImpl.generateDataSources(ConnectionFactoryImpl.java:259)
at
org.datanucleus.store.rdbms.ConnectionFactoryImpl.initialiseDataSources(ConnectionFactoryImpl.java:131)
at
org.datanucleus.store.rdbms.ConnectionFactoryImpl.<init>(ConnectionFactoryImpl.java:85)
... 83 more
Caused by:
org.datanucleus.store.rdbms.connectionpool.DatastoreDriverNotFoundException:
The specified datastore driver ("com.mysql.jdbc.Driver") was not found in the
CLASSPATH. Please check your CLASSPATH specification, and the name of the
driver.
at
org.datanucleus.store.rdbms.connectionpool.AbstractConnectionPoolFactory.loadDriver(AbstractConnectionPoolFactory.java:58)
at
org.datanucleus.store.rdbms.connectionpool.DBCPConnectionPoolFactory.createConnectionPool(DBCPConnectionPoolFactory.java:50)
at
org.datanucleus.store.rdbms.ConnectionFactoryImpl.generateDataSources(ConnectionFactoryImpl.java:238)
... 85 more
16/04/21 16:21:25 INFO SparkUI: Stopped Spark web UI at http://192.168.0.30:4040
16/04/21 16:21:25 INFO DAGScheduler: Stopping DAGScheduler
16/04/21 16:21:25 INFO YarnClientSchedulerBackend: Shutting down all executors
16/04/21 16:21:25 INFO YarnClientSchedulerBackend: Interrupting monitor thread
16/04/21 16:21:25 INFO YarnClientSchedulerBackend: Asking each executor to shut
down
16/04/21 16:21:25 INFO YarnClientSchedulerBackend: Stopped
16/04/21 16:21:25 INFO MapOutputTrackerMasterEndpoint:
MapOutputTrackerMasterEndpoint stopped!
16/04/21 16:21:25 INFO MemoryStore: MemoryStore cleared
16/04/21 16:21:25 INFO BlockManager: BlockManager stopped
16/04/21 16:21:25 INFO BlockManagerMaster: BlockManagerMaster stopped
16/04/21 16:21:25 INFO OutputCommitCoordinator$OutputCommitCoordinatorEndpoint:
OutputCommitCoordinator stopped!
Obviously, Spark SQL can not find com.mysql.jdbc.Driver, but I have already put
mysql-connector-5.1.18.jar at both $SPARK_HOME/lib and $HIVE_HOME/lib.
But if I use following command, everything goese well:
./spark-sql --master yarn --jars ../lib/mysql-connector-5.1.18.jar --database
hivedb -f tpch_query1
My question is I don't know if it should be a bug or whatever, and I didn't
find this is required in Spark document to run Spark SQL on hive table.
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