[
https://issues.apache.org/jira/browse/SPARK-21367?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16082741#comment-16082741
]
shane knapp commented on SPARK-21367:
-------------------------------------
here's what we install during server setup:
{noformat}
Rscript -e 'install.packages("digest", repos="http://cran.stat.ucla.edu/";)'
Rscript -e 'install.packages("testthat", repos="http://cran.stat.ucla.edu/";)'
Rscript -e 'install.packages("knitr", repos="http://cran.stat.ucla.edu/";)'
Rscript -e 'install.packages("devtools", repos="http://cran.stat.ucla.edu/";)'
Rscript -e 'devtools::install_github("jimhester/lintr")'
Rscript -e 'install.packages("e1071", repos="http://cran.stat.ucla.edu/";)'
Rscript -e 'install.packages("rmarkdown", repos="http://cran.stat.ucla.edu/";)'
$YUM pandoc
$YUM pandoc-citeproc
{noformat}
note: pandoc and pandoc-citeproc were installed via yum, but did not get
updated on june 20th.
{noformat}
$ pssh -h jenkins_workers.txt -i -t 0 "grep pandoc /var/log/yum.log"
[1] 11:43:49 [FAILURE] amp-jenkins-worker-04 Exited with error code 1
[2] 11:43:49 [FAILURE] amp-jenkins-worker-05 Exited with error code 1
[3] 11:43:49 [FAILURE] amp-jenkins-worker-07 Exited with error code 1
[4] 11:43:49 [FAILURE] amp-jenkins-worker-03 Exited with error code 1
[5] 11:43:49 [FAILURE] amp-jenkins-worker-06 Exited with error code 1
[6] 11:43:49 [FAILURE] amp-jenkins-worker-02 Exited with error code 1
[7] 11:43:49 [FAILURE] amp-jenkins-worker-08 Exited with error code 1
[8] 11:43:50 [FAILURE] amp-jenkins-worker-01 Exited with error code 1
{noformat}
> R older version of Roxygen2 on Jenkins
> --------------------------------------
>
> Key: SPARK-21367
> URL: https://issues.apache.org/jira/browse/SPARK-21367
> Project: Spark
> Issue Type: Bug
> Components: SparkR
> Affects Versions: 2.3.0
> Reporter: Felix Cheung
> Assignee: shane knapp
> Attachments: R.paks
>
>
> Getting this message from a recent build.
> https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/79461/console
> Warning messages:
> 1: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> 2: In check_dep_version(pkg, version, compare) :
> Need roxygen2 >= 5.0.0 but loaded version is 4.1.1
> * installing *source* package 'SparkR' ...
> ** R
> We have been running with 5.0.1 and haven't changed for a year.
> NOTE: Roxygen 6.x has some big changes and IMO we should not move to that yet.
--
This message was sent by Atlassian JIRA
(v6.4.14#64029)
---------------------------------------------------------------------
To unsubscribe, e-mail: [email protected]
For additional commands, e-mail: [email protected]
