Igor Berman created SPARK-24223:
-----------------------------------
Summary: ExternalShuffleService looses registrations
Key: SPARK-24223
URL: https://issues.apache.org/jira/browse/SPARK-24223
Project: Spark
Issue Type: Bug
Components: Mesos, Shuffle
Affects Versions: 2.1.0
Reporter: Igor Berman
Hi, we have long running services that use dynamic allocation on Mesos(1.1.0)
Services running periodic spark batch jobs with open spark context.
However, there are sporadic failures caused by below error.
Seems like one executor disconnects (?) from some external shuffle service and
this fails everything. There is no possibility to recover/reregister executor
after this. Usually restarting service helps(i.e. external shuffle services are
up and running on all executors)
Might be connected to https://issues.apache.org/jira/browse/SPARK-9439 but for
Mesos integration
Any ideas will be welcome.
{code:java}
org.apache.spark.SparkException: Job aborted due to stage failure:
ShuffleMapStage 3820 () has failed the maximum allowable number of times: 4.
Most recent failure reason: org.apache.spark.shuffle.FetchFailedException:
Failure while fetching StreamChunkId{streamId=537714277840, chunkIndex=0}:
java.lang.RuntimeException: Executor is not registered
(appId=d265bc5e-cb4a-4f3e-88a2-aa79ca3a05fc-0067, execId=2943)
at org.apache.spark.network.shuffle.ExternalShuffleBlockResolver.getBloc
kData(ExternalShuffleBlockResolver.java:171)
at
org.apache.spark.network.shuffle.ExternalShuffleBlockHandler$1.next(ExternalShuffleBlockHandler.java:105)
at
org.apache.spark.network.shuffle.ExternalShuffleBlockHandler$1.next(ExternalShuffleBlockHandler.java:95
at
org.apache.spark.network.server.OneForOneStreamManager.getChunk(OneForOneStreamManager.java:89)
at
org.apache.spark.network.server.TransportRequestHandler.processFetchRequest(TransportRequestHandler.java:125)
at org.apache.spark.network.server.TransportRequ
estHandler.handle(TransportRequestHandler.java:103)
at
org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:3
57)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at io.netty.handler.timeout.IdleStateHan
dler.channelRead(IdleStateHandler.java:287)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at
io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102)
at io.netty.channel.AbstractChannelHandlerContext.invoke
ChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336
)
at
org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at io.netty.channel.AbstractChannelHandlerContex
t.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at
io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1
294)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at io.netty.channel.DefaultChannelPipeli
ne.fireChannelRead(DefaultChannelPipeline.java:911)
at
io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643)
at io.netty.channel.nio.NioEvent
Loop.processSelectedKeysOptimized(NioEventLoop.java:566)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442)
at io.netty.util.concurrent.SingleThreadEventExe
cutor$2.run(SingleThreadEventExecutor.java:131)
at
io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144)
at java.lang.Thread.run(Thread.java:748)
at
org.apache.spark.storage.ShuffleBlockFetcherIterator.throwFetchFailedException(ShuffleBlockFetcherIterator.scala:442)
at
org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:418)
at
org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:59)
at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at
org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:32)
at
org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:37)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggregateWithKeys$(Unknown
Source) at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown
Source)
at
org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at
org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:395)
at
org.apache.spark.sql.execution.columnar.InMemoryRelation$$anonfun$1$$anon$1.hasNext(InMemoryRelation.scala:133)
at
org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:215)
at
org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1038)
at
org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1029)
at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:969) at
org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1029)
at
org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:760)
at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:334)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:285)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:108) at
org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748) Caused by:
org.apache.spark.network.client.ChunkFetchFailureException: Failure while
fetching StreamChunkId{streamId=537714277840, chunkIndex=0}:
java.lang.RuntimeException: Executor is not registered
(appId=d265bc5e-cb4a-4f3e-88a2-aa79ca3a05fc-0067, execId=2943)
at
org.apache.spark.network.shuffle.ExternalShuffleBlockResolver.getBlockData(ExternalShuffleBlockResolver.java:171)
at
org.apache.spark.network.shuffle.ExternalShuffleBlockHandler$1.next(ExternalShuffleBlockHandler.java:105)
at
org.apache.spark.network.shuffle.ExternalShuffleBlockHandler$1.next(ExternalShuffleBlockHandler.java:95)
at
org.apache.spark.network.server.OneForOneStreamManager.getChunk(OneForOneStreamManager.java:89)
at
org.apache.spark.network.server.TransportRequestHandler.processFetchRequest(TransportRequestHandler.java:125)
at
org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:103)
at
org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at
io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at
io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at
org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at
io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1294)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:911)
at
io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643)
at
io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442)
at
io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131)
at
io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144)
at java.lang.Thread.run(Thread.java:748)
at
org.apache.spark.network.client.TransportResponseHandler.handle(TransportResponseHandler.java:182)
at
org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:120)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at
io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at
io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at
org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:336)
at
io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1294)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:357)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:343)
at
io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:911)
at
io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643)
at
io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442)
at
io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131)
at
io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144)
... 1 more{code}
--
This message was sent by Atlassian JIRA
(v7.6.3#76005)
---------------------------------------------------------------------
To unsubscribe, e-mail: [email protected]
For additional commands, e-mail: [email protected]
