Hossein Vatani created SPARK-24845:
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Summary: spark distribution generate exception while locally
worked correctly
Key: SPARK-24845
URL: https://issues.apache.org/jira/browse/SPARK-24845
Project: Spark
Issue Type: Bug
Components: Spark Core
Affects Versions: 2.1.3
Environment: _I set spark.driver.extraClassPath_ and
_spark.executor.extraClassPath_ environment per machine in spark-defaults.conf
file as:
{{/opt/spark/jars/*:/opt/hbase/lib/commons-collections-3.2.2.jar:/opt/hbase/lib/commons-httpclient-3.1.jar:/opt/hbase/lib/findbugs-annotations-1.3.9-1.jar:/opt/hbase/lib/hbase-annotations-1.2.6.jar:/opt/hbase/lib/hbase-annotations-1.2.6-tests.jar:/opt/hbase/lib/hbase-client-1.2.6.jar:/opt/hbase/lib/hbase-common-1.2.6.jar:/opt/hbase/lib/hbase-common-1.2.6-tests.jar:/opt/hbase/lib/hbase-examples-1.2.6.jar:/opt/hbase/lib/hbase-external-blockcache-1.2.6.jar:/opt/hbase/lib/hbase-hadoop2-compat-1.2.6.jar:/opt/hbase/lib/hbase-hadoop-compat-1.2.6.jar:/opt/hbase/lib/hbase-it-1.2.6.jar:/opt/hbase/lib/hbase-it-1.2.6-tests.jar:/opt/hbase/lib/hbase-prefix-tree-1.2.6.jar:/opt/hbase/lib/hbase-procedure-1.2.6.jar:/opt/hbase/lib/hbase-protocol-1.2.6.jar:/opt/hbase/lib/hbase-resource-bundle-1.2.6.jar:/opt/hbase/lib/hbase-rest-1.2.6.jar:/opt/hbase/lib/hbase-server-1.2.6.jar:/opt/hbase/lib/hbase-server-1.2.6-tests.jar:/opt/hbase/lib/hbase-shell-1.2.6.jar:/opt/hbase/lib/hbase-thrift-1.2.6.jar:/opt/hbase/lib/jetty-util-6.1.26.jar:/opt/hbase/lib/ruby/hbase:/opt/hbase/lib/ruby/hbase/hbase.rb:/opt/hbase/lib/ruby/hbase.rb:/opt/hbase/lib/protobuf-java-2.5.0.jar:/opt/hbase/lib/metrics-core-2.2.0.jar:/opt/hbase/lib/htrace-core-3.1.0-incubating.jar:/opt/hbase/lib/guava-12.0.1.jar:/opt/hbase/lib/asm-3.1.jar:/opt/hbase/lib/Cdrpackage.jar:/opt/hbase/lib/commons-daemon-1.0.13.jar:/opt/hbase/lib/commons-el-1.0.jar:/opt/hbase/lib/commons-math-2.2.jar:/opt/hbase/lib/disruptor-3.3.0.jar:/opt/hbase/lib/jamon-runtime-2.4.1.jar:/opt/hbase/lib/jasper-compiler-5.5.23.jar:/opt/hbase/lib/jasper-runtime-5.5.23.jar:/opt/hbase/lib/jaxb-impl-2.2.3-1.jar:/opt/hbase/lib/jcodings-1.0.8.jar:/opt/hbase/lib/jersey-core-1.9.jar:/opt/hbase/lib/jersey-guice-1.9.jar:/opt/hbase/lib/jersey-json-1.9.jar:/opt/hbase/lib/jettison-1.3.3.jar:/opt/hbase/lib/jetty-sslengine-6.1.26.jar:/opt/hbase/lib/joni-2.1.2.jar:/opt/hbase/lib/jruby-complete-1.6.8.jar:/opt/hbase/lib/jsch-0.1.42.jar:/opt/hbase/lib/jsp-2.1-6.1.14.jar:/opt/hbase/lib/junit-4.12.jar:/opt/hbase/lib/servlet-api-2.5-6.1.14.jar:/opt/hbase/lib/servlet-api-2.5.jar:/opt/hbase/lib/spymemcached-2.11.6.jar:/opt/hive-hbase//opt/hive-hbase/hive-hbase-handler-2.0.1.jar}}
Reporter: Hossein Vatani
we tried to read HBase table data with a distributed spark on three servers.
OS: ubuntu 14.04
hadoop 2.7.3
hbase 1.2.6
first I lunch spark shell with +spark-shell --master spark://master:7077+
command and run:
_{color:#707070}import org.apache.hadoop.hbase.util.Bytes
import org.apache.hadoop.hbase.client.{HBaseAdmin, Result, Put, HTable}
import org.apache.hadoop.hbase.{ HBaseConfiguration, HTableDescriptor,
HColumnDescriptor }
import org.apache.hadoop.hbase.mapreduce.TableInputFormat
import org.apache.hadoop.hbase.io.ImmutableBytesWritable
import org.apache.hadoop.hbase.client.TableDescriptor
import org.apache.spark._
import org.apache.spark.rdd.NewHadoopRDD
import org.apache.hadoop.hbase.{HBaseConfiguration, HTableDescriptor}
import org.apache.hadoop.hbase.client.HBaseAdmin
import org.apache.hadoop.hbase.mapreduce.TableInputFormat
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.hbase.HColumnDescriptor
import org.apache.hadoop.hbase.util.Bytes
import org.apache.hadoop.hbase.client.Put;
import org.apache.hadoop.hbase.client.HTable;
import org.apache.hadoop.conf.Configuration
import scala.collection.JavaConverters._
val conf = HBaseConfiguration.create()
val tablename = "default:Table1"
conf.set(TableInputFormat.INPUT_TABLE,tablename)
val admin = new HBaseAdmin(conf)
admin.isTableAvailable(tablename) <-- it return true, it
val hBaseRDD = sc.newAPIHadoopRDD(conf, classOf[TableInputFormat],
classOf[ImmutableBytesWritable], classOf[Result])
hBaseRDD.count(){color}_
and it generated below:
*{color:#f79232}java.lang.IllegalStateException: unread block data
at
java.io.ObjectInputStream$BlockDataInputStream.setBlockDataMode(ObjectInputStream.java:2776)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1600)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2280)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2204)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2062)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1568)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:428)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75)
at
org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:301)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1152)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:622)
at java.lang.Thread.run(Thread.java:748)
2018-07-17 15:58:54,974 ERROR [task-result-getter-3] scheduler.TaskSetManager:
Task 0 in stage 0.0 failed 4 times; aborting job
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in
stage 0.0 failed 4 times, most recent failure: Lost task 0.3 in stage 0.0 (TID
3, 10.11.1.12 , executor 2): java.lang.IllegalStateException: unread block data
at
java.io.ObjectInputStream$BlockDataInputStream.setBlockDataMode(ObjectInputStream.java:2776)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1600)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2280)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2204)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2062)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1568)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:428)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75)
at
org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:301)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1152)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:622)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace: at
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1455)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1443)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1442)
at
scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48) at
org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1442)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:802)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:802)
at scala.Option.foreach(Option.scala:257)
at
org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:802)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1670)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1625)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1614)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:628)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1928)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1941)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1954)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1968)
at org.apache.spark.rdd.RDD.count(RDD.scala:1158)
... 52 elided
Caused by: java.lang.IllegalStateException: unread block data
at
java.io.ObjectInputStream$BlockDataInputStream.setBlockDataMode(ObjectInputStream.java:2776)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1600)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2280)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2204)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2062)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1568)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:428)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75)
at
org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:301)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1152)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:622)
at java.lang.Thread.run(Thread.java:748){color}*
it occurred while above code run I connect to loacal mode spark(I meant
+spark-shell+) without error.
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