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https://issues.apache.org/jira/browse/SPARK-25778?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Greg Senia updated SPARK-25778:
-------------------------------
Attachment: SPARK-25778.4.patch
> WriteAheadLogBackedBlockRDD in YARN Cluster Mode Fails due lack of access to
> tmpDir from $PWD to HDFS
> -----------------------------------------------------------------------------------------------------
>
> Key: SPARK-25778
> URL: https://issues.apache.org/jira/browse/SPARK-25778
> Project: Spark
> Issue Type: Improvement
> Components: Structured Streaming, YARN
> Affects Versions: 2.1.0, 2.1.1, 2.1.2, 2.1.3, 2.2.0, 2.2.1, 2.2.2, 2.3.1,
> 2.3.2
> Reporter: Greg Senia
> Priority: Major
> Attachments: SPARK-25778.2.patch, SPARK-25778.4.patch,
> SPARK-25778.patch
>
>
> WriteAheadLogBackedBlockRDD in YARN Cluster Mode Fails due lack of access to
> HDFS path due to it using a similar name was $PWD folder from YARN AM Cluster
> Mode for Spark
> While attempting to use Spark Streaming and WriteAheadLogs. I noticed the
> following errors after the driver attempted to recovery the already read data
> that was being written to HDFS in the checkpoint folder. After spending many
> hours looking at the cause of the following error below due to the fact the
> parent folder /hadoop exists in our HDFS FS.. I am wonder if its possible to
> make an option configurable to choose an alternate bogus directory that will
> never be used.
> hadoop fs -ls /
> drwx------ - dsadm dsadm 0 2017-06-20 13:20 /hadoop
> hadoop fs -ls /hadoop/apps
> drwx------ - dsadm dsadm 0 2017-06-20 13:20 /hadoop/apps
> streaming/src/main/scala/org/apache/spark/streaming/rdd/WriteAheadLogBackedBlockRDD.scala
> val nonExistentDirectory = new File(
> System.getProperty("java.io.tmpdir"),
> UUID.randomUUID().toString).getAbsolutePath
> writeAheadLog = WriteAheadLogUtils.createLogForReceiver(
> SparkEnv.get.conf, nonExistentDirectory, hadoopConf)
> dataRead = writeAheadLog.read(partition.walRecordHandle)
> 18/10/19 00:03:03 DEBUG YarnSchedulerBackend$YarnDriverEndpoint: Launching
> task 72 on executor id: 1 hostname: ha20t5002dn.tech.hdp.example.com.
> 18/10/19 00:03:03 DEBUG BlockManager: Getting local block broadcast_4_piece0
> as bytes
> 18/10/19 00:03:03 DEBUG BlockManager: Level for block broadcast_4_piece0 is
> StorageLevel(disk, memory, 1 replicas)
> 18/10/19 00:03:03 INFO BlockManagerInfo: Added broadcast_4_piece0 in memory
> on ha20t5002dn.tech.hdp.example.com:32768 (size: 33.7 KB, free: 912.2 MB)
> 18/10/19 00:03:03 WARN TaskSetManager: Lost task 0.0 in stage 3.0 (TID 71,
> ha20t5002dn.tech.hdp.example.com, executor 1):
> org.apache.spark.SparkException: Could not read data from write ahead log
> record
> FileBasedWriteAheadLogSegment(hdfs://tech/user/hdpdevspark/sparkstreaming/Spark_Streaming_MQ_IDMS/receivedData/0/log-1539921695606-1539921755606,0,1017)
> at
> org.apache.spark.streaming.rdd.WriteAheadLogBackedBlockRDD.org$apache$spark$streaming$rdd$WriteAheadLogBackedBlockRDD$$getBlockFromWriteAheadLog$1(WriteAheadLogBackedBlockRDD.scala:145)
> at
> org.apache.spark.streaming.rdd.WriteAheadLogBackedBlockRDD$$anonfun$compute$1.apply(WriteAheadLogBackedBlockRDD.scala:173)
> at
> org.apache.spark.streaming.rdd.WriteAheadLogBackedBlockRDD$$anonfun$compute$1.apply(WriteAheadLogBackedBlockRDD.scala:173)
> at scala.Option.getOrElse(Option.scala:121)
> at
> org.apache.spark.streaming.rdd.WriteAheadLogBackedBlockRDD.compute(WriteAheadLogBackedBlockRDD.scala:173)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
> at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
> at org.apache.spark.scheduler.Task.run(Task.scala:108)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> Caused by: org.apache.hadoop.security.AccessControlException: Permission
> denied: user=hdpdevspark, access=EXECUTE,
> inode="/hadoop/diskc/hadoop/yarn/local/usercache/hdpdevspark/appcache/application_1539554105597_0338/container_e322_1539554105597_0338_01_000002/tmp/170f36b8-9202-4556-89a4-64587c7136b6":dsadm:dsadm:drwx------
> at
> org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.check(FSPermissionChecker.java:319)
> at
> org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkTraverse(FSPermissionChecker.java:259)
> at
> org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkPermission(FSPermissionChecker.java:205)
> at
> org.apache.ranger.authorization.hadoop.RangerHdfsAuthorizer$RangerAccessControlEnforcer.checkPermission(RangerHdfsAuthorizer.java:307)
> at
> org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkPermission(FSPermissionChecker.java:190)
> at
> org.apache.hadoop.hdfs.server.namenode.FSDirectory.checkPermission(FSDirectory.java:1827)
> at
> org.apache.hadoop.hdfs.server.namenode.FSDirStatAndListingOp.getFileInfo(FSDirStatAndListingOp.java:108)
> at
> org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getFileInfo(FSNamesystem.java:3972)
> at
> org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getFileInfo(NameNodeRpcServer.java:1130)
> at
> org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getFileInfo(ClientNamenodeProtocolServerSideTranslatorPB.java:851)
> at
> org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
> at
> org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:640)
> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:982)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2313)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2309)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:422)
> at
> org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1740)
> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2307)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
> at
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
> at
> org.apache.hadoop.ipc.RemoteException.instantiateException(RemoteException.java:106)
> at
> org.apache.hadoop.ipc.RemoteException.unwrapRemoteException(RemoteException.java:73)
> at org.apache.hadoop.hdfs.DFSClient.getFileInfo(DFSClient.java:2110)
> at
> org.apache.hadoop.hdfs.DistributedFileSystem$22.doCall(DistributedFileSystem.java:1305)
> at
> org.apache.hadoop.hdfs.DistributedFileSystem$22.doCall(DistributedFileSystem.java:1301)
> at
> org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
> at
> org.apache.hadoop.hdfs.DistributedFileSystem.getFileStatus(DistributedFileSystem.java:1317)
> at
> com.wandisco.fs.client.ReplicatedFC.xlateAndGetFileStatus(ReplicatedFC.java:283)
> at com.wandisco.fs.client.FusionHdfs.getFileStatus(FusionHdfs.java:277)
> at
> org.apache.spark.streaming.util.FileBasedWriteAheadLog.initializeOrRecover(FileBasedWriteAheadLog.scala:245)
> at
> org.apache.spark.streaming.util.FileBasedWriteAheadLog.<init>(FileBasedWriteAheadLog.scala:80)
> at
> org.apache.spark.streaming.util.WriteAheadLogUtils$$anonfun$2.apply(WriteAheadLogUtils.scala:142)
> at
> org.apache.spark.streaming.util.WriteAheadLogUtils$$anonfun$2.apply(WriteAheadLogUtils.scala:142)
> at scala.Option.getOrElse(Option.scala:121)
> at
> org.apache.spark.streaming.util.WriteAheadLogUtils$.createLog(WriteAheadLogUtils.scala:141)
> at
> org.apache.spark.streaming.util.WriteAheadLogUtils$.createLogForReceiver(WriteAheadLogUtils.scala:111)
> at
> org.apache.spark.streaming.rdd.WriteAheadLogBackedBlockRDD.org$apache$spark$streaming$rdd$WriteAheadLogBackedBlockRDD$$getBlockFromWriteAheadLog$1(WriteAheadLogBackedBlockRDD.scala:140)
> ... 12 more
> Caused by:
> org.apache.hadoop.ipc.RemoteException(org.apache.hadoop.security.AccessControlException):
> Permission denied: user=hdpdevspark, access=EXECUTE,
> inode="/hadoop/diskc/hadoop/yarn/local/usercache/hdpdevspark/appcache/application_1539554105597_0338/container_e322_1539554105597_0338_01_000002/tmp/170f36b8-9202-4556-89a4-64587c7136b6":dsadm:dsadm:drwx------
> at
> org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.check(FSPermissionChecker.java:319)
> at
> org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkTraverse(FSPermissionChecker.java:259)
> at
> org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkPermission(FSPermissionChecker.java:205)
> at
> org.apache.ranger.authorization.hadoop.RangerHdfsAuthorizer$RangerAccessControlEnforcer.checkPermission(RangerHdfsAuthorizer.java:307)
> at
> org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkPermission(FSPermissionChecker.java:190)
> at
> org.apache.hadoop.hdfs.server.namenode.FSDirectory.checkPermission(FSDirectory.java:1827)
> at
> org.apache.hadoop.hdfs.server.namenode.FSDirStatAndListingOp.getFileInfo(FSDirStatAndListingOp.java:108)
> at
> org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getFileInfo(FSNamesystem.java:3972)
> at
> org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getFileInfo(NameNodeRpcServer.java:1130)
> at
> org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getFileInfo(ClientNamenodeProtocolServerSideTranslatorPB.java:851)
> at
> org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
> at
> org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:640)
> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:982)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2313)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2309)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:422)
> at
> org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1740)
> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2307)
> at org.apache.hadoop.ipc.Client.call(Client.java:1475)
> at org.apache.hadoop.ipc.Client.call(Client.java:1412)
> at
> org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:229)
> at com.sun.proxy.$Proxy17.getFileInfo(Unknown Source)
> at
> org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getFileInfo(ClientNamenodeProtocolTranslatorPB.java:771)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at
> org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:191)
> at
> org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
> at com.sun.proxy.$Proxy18.getFileInfo(Unknown Source)
> at org.apache.hadoop.hdfs.DFSClient.getFileInfo(DFSClient.java:2108)
> ... 26 more
> 18/10/19 00:03:03 DEBUG YarnClusterScheduler: parentName: , name:
> TaskSet_3.0, runningTasks: 0
> 18/10/19 00:03:03 DEBUG YarnClusterScheduler: parentName: , name:
> TaskSet_4.0, runningTasks: 1
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