qian created SPARK-38652:
----------------------------
Summary: K8S IT Test DepsTestsSuite blocks with PathIOException in
hadoop-aws-3.3.2
Key: SPARK-38652
URL: https://issues.apache.org/jira/browse/SPARK-38652
Project: Spark
Issue Type: Bug
Components: Kubernetes, Tests
Affects Versions: 3.3.0
Reporter: qian
DepsTestsSuite in k8s IT test is blocked with PathIOException in
hadoop-aws-3.3.2. Exception Message is as follow
{code:java}
Exception in thread "main" org.apache.spark.SparkException: Uploading file
/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar
failed...
at
org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:332)
at
org.apache.spark.deploy.k8s.KubernetesUtils$.$anonfun$uploadAndTransformFileUris$1(KubernetesUtils.scala:277)
at scala.collection.TraversableLike.$anonfun$map$1(TraversableLike.scala:286)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at scala.collection.TraversableLike.map(TraversableLike.scala:286)
at scala.collection.TraversableLike.map$(TraversableLike.scala:279)
at scala.collection.AbstractTraversable.map(Traversable.scala:108)
at
org.apache.spark.deploy.k8s.KubernetesUtils$.uploadAndTransformFileUris(KubernetesUtils.scala:275)
at
org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.$anonfun$getAdditionalPodSystemProperties$1(BasicDriverFeatureStep.scala:187)
at scala.collection.immutable.List.foreach(List.scala:431)
at
org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.getAdditionalPodSystemProperties(BasicDriverFeatureStep.scala:178)
at
org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.$anonfun$buildFromFeatures$5(KubernetesDriverBuilder.scala:86)
at
scala.collection.LinearSeqOptimized.foldLeft(LinearSeqOptimized.scala:126)
at scala.collection.LinearSeqOptimized.foldLeft$(LinearSeqOptimized.scala:122)
at scala.collection.immutable.List.foldLeft(List.scala:91)
at
org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.buildFromFeatures(KubernetesDriverBuilder.scala:84)
at
org.apache.spark.deploy.k8s.submit.Client.run(KubernetesClientApplication.scala:104)
at
org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5(KubernetesClientApplication.scala:248)
at
org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5$adapted(KubernetesClientApplication.scala:242)
at org.apache.spark.util.Utils$.tryWithResource(Utils.scala:2738)
at
org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.run(KubernetesClientApplication.scala:242)
at
org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.start(KubernetesClientApplication.scala:214)
at
org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:958)
at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:180)
at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:203)
at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:90)
at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:1046)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:1055)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)Caused by:
org.apache.spark.SparkException: Error uploading file
spark-examples_2.12-3.4.0-SNAPSHOT.jar
at
org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:355)
at
org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:328)
... 30 more
Caused by: org.apache.hadoop.fs.PathIOException: `Cannot get relative path for
URI:file:///Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar':
Input/output error at
org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.getFinalPath(CopyFromLocalOperation.java:365)
at
org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.uploadSourceFromFS(CopyFromLocalOperation.java:226)
at
org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.execute(CopyFromLocalOperation.java:170)
at
org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$copyFromLocalFile$25(S3AFileSystem.java:3920)
at
org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.lambda$trackDurationOfOperation$5(IOStatisticsBinding.java:499)
at
org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.trackDuration(IOStatisticsBinding.java:444)
at
org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2337)
at
org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2356)
at
org.apache.hadoop.fs.s3a.S3AFileSystem.copyFromLocalFile(S3AFileSystem.java:3913)
at
org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:352)
... 31 more {code}
For more information please refer to
[HADOOP-18173|https://issues.apache.org/jira/browse/HADOOP-18173].
But, DepsTestsSuite with hadoop-aws-3.3.1 works normally.
{noformat}
hengzhen.sq@b-q922md6r-0237 ~/Desktop$
/Users/hengzhen.sq/IdeaProjects/spark/bin/spark-submit --deploy-mode cluster
--class org.apache.spark.examples.SparkRemoteFileTest --master
k8s://https://192.168.64.86:8443/ --conf
spark.hadoop.fs.s3a.impl=org.apache.hadoop.fs.s3a.S3AFileSystem --conf
spark.testing=false --conf spark.hadoop.fs.s3a.access.key=minio --conf
spark.kubernetes.driver.label.spark-app-locator=a8937b5fdf6a444a806ee1c3ecac37fc
--conf spark.kubernetes.file.upload.path=s3a://spark --conf
spark.authenticate=true --conf spark.executor.instances=1 --conf
spark.kubernetes.submission.waitAppCompletion=false --conf
spark.kubernetes.executor.label.spark-app-locator=a8937b5fdf6a444a806ee1c3ecac37fc
--conf spark.kubernetes.namespace=spark-job --conf
spark.kubernetes.authenticate.driver.serviceAccountName=spark --conf
spark.hadoop.fs.s3a.secret.key=miniostorage --conf
spark.executor.extraJavaOptions=-Dlog4j2.debug --conf
spark.hadoop.fs.s3a.endpoint=192.168.64.86:32681 --conf
spark.app.name=spark-test-app --conf
spark.files=/tmp/tmp7013228683780235449.txt --conf spark.ui.enabled=true --conf
spark.driver.extraJavaOptions=-Dlog4j2.debug --conf
spark.kubernetes.container.image=registry.cn-hangzhou.aliyuncs.com/smart-spark/spark:test
--conf spark.executor.cores=1 --conf
spark.jars.packages=org.apache.hadoop:hadoop-aws:3.3.1 --conf
spark.hadoop.fs.s3a.connection.ssl.enabled=false
/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar
tmp7013228683780235449.txt
22/03/25 10:24:10 WARN Utils: Your hostname, B-Q922MD6R-0237.local resolves to
a loopback address: 127.0.0.1; using 30.25.86.17 instead (on interface en0)
22/03/25 10:24:10 WARN Utils: Set SPARK_LOCAL_IP if you need to bind to another
address
:: loading settings :: url =
jar:file:/Users/hengzhen.sq/IdeaProjects/spark/assembly/target/scala-2.12/jars/ivy-2.5.0.jar!/org/apache/ivy/core/settings/ivysettings.xml
Ivy Default Cache set to: /Users/hengzhen.sq/.ivy2/cache
The jars for the packages stored in: /Users/hengzhen.sq/.ivy2/jars
org.apache.hadoop#hadoop-aws added as a dependency
:: resolving dependencies ::
org.apache.spark#spark-submit-parent-8220baa6-0490-4484-9779-945d4cf69df4;1.0
confs: [default]
found org.apache.hadoop#hadoop-aws;3.3.1 in central
found com.amazonaws#aws-java-sdk-bundle;1.11.901 in central
found org.wildfly.openssl#wildfly-openssl;1.0.7.Final in central
:: resolution report :: resolve 224ms :: artifacts dl 6ms
:: modules in use:
com.amazonaws#aws-java-sdk-bundle;1.11.901 from central in [default]
org.apache.hadoop#hadoop-aws;3.3.1 from central in [default]
org.wildfly.openssl#wildfly-openssl;1.0.7.Final from central in
[default]
---------------------------------------------------------------------
| | modules || artifacts |
| conf | number| search|dwnlded|evicted|| number|dwnlded|
---------------------------------------------------------------------
| default | 3 | 0 | 0 | 0 || 3 | 0 |
---------------------------------------------------------------------
:: retrieving ::
org.apache.spark#spark-submit-parent-8220baa6-0490-4484-9779-945d4cf69df4
confs: [default]
0 artifacts copied, 3 already retrieved (0kB/6ms)
22/03/25 10:24:11 WARN NativeCodeLoader: Unable to load native-hadoop library
for your platform... using builtin-java classes where applicable
22/03/25 10:24:11 INFO SparkKubernetesClientFactory: Auto-configuring K8S
client using current context from users K8S config file
22/03/25 10:24:12 INFO KerberosConfDriverFeatureStep: You have not specified a
krb5.conf file locally or via a ConfigMap. Make sure that you have the
krb5.conf locally on the driver image.
22/03/25 10:24:12 WARN MetricsConfig: Cannot locate configuration: tried
hadoop-metrics2-s3a-file-system.properties,hadoop-metrics2.properties
22/03/25 10:24:12 INFO MetricsSystemImpl: Scheduled Metric snapshot period at
10 second(s).
22/03/25 10:24:12 INFO MetricsSystemImpl: s3a-file-system metrics system started
22/03/25 10:24:13 INFO KubernetesUtils: Uploading file:
/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar
to dest:
s3a://spark/spark-upload-f49ee7fc-182d-499a-b073-40b298c55e8b/spark-examples_2.12-3.4.0-SNAPSHOT.jar...
22/03/25 10:24:13 INFO KubernetesUtils: Uploading file:
/private/tmp/tmp7013228683780235449.txt to dest:
s3a://spark/spark-upload-906c6d35-6aa7-4ee8-8c37-434f547c6087/tmp7013228683780235449.txt...
22/03/25 10:24:14 INFO ShutdownHookManager: Shutdown hook called
22/03/25 10:24:14 INFO ShutdownHookManager: Deleting directory
/private/var/folders/3t/v_td68551s78mq4c1cpk86gc0000gn/T/spark-e89a395e-c3b4-4619-8c9b-e60310af6503
22/03/25 10:24:14 INFO MetricsSystemImpl: Stopping s3a-file-system metrics
system...
22/03/25 10:24:14 INFO MetricsSystemImpl: s3a-file-system metrics system
stopped.
22/03/25 10:24:14 INFO MetricsSystemImpl: s3a-file-system metrics system
shutdown complete.{noformat}
CopyFromLocalFile action in hadoop-aws is different between 3.3.1 and 3.3.2,
because 3.3.2 introuduces CopyFromLocalFileOperation.
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