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https://issues.apache.org/jira/browse/SPARK-39357?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17544995#comment-17544995
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Apache Spark commented on SPARK-39357:
--------------------------------------

User 'tianshuang' has created a pull request for this issue:
https://github.com/apache/spark/pull/36741

> pmCache memory leak caused by IsolatedClassLoader
> -------------------------------------------------
>
>                 Key: SPARK-39357
>                 URL: https://issues.apache.org/jira/browse/SPARK-39357
>             Project: Spark
>          Issue Type: Bug
>          Components: SQL
>    Affects Versions: 2.4.4, 3.2.1
>            Reporter: tianshuang
>            Priority: Major
>         Attachments: Xnip2022-06-01_23-09-35.jpg, 
> Xnip2022-06-01_23-19-35.jpeg, Xnip2022-06-01_23-32-39.jpg
>
>
> I found this bug in Spark 2.4.4, because the related code has not changed, so 
> this bug still exists on master, the following is a brief description of this 
> bug:
> In May 2015, 
> [SPARK-6907|https://github.com/apache/spark/commit/daa70bf135f23381f5f410aa95a1c0e5a2888568]
>  introduced isolated classloader for HiveMetastore to support Hive 
> multi-version loading, but this PR resulted in [RawStore cleanup 
> mechanism|https://github.com/apache/spark/blob/master/sql/hive-thriftserver/src/main/java/org/apache/hive/service/server/ThreadFactoryWithGarbageCleanup.java
>  #L27-L42] is broken because the `ThreadWithGarbageCleanup` class used by 
> `HiveServer2-Handler-Pool` and `HiveServer2-Background-Pool` and 
> `HiveServer2-HttpHandler-Pool` is loaded by AppClassLoader, in the source 
> code of `ThreadWithGarbageCleanup` class: `RawStore threadLocalRawStore = 
> HiveMetaStore.HMSHandler.getRawStore();` This line of code will use the 
> `threadLocalMS` instance in `HiveMetaStore.HMSHandler` (loaded by 
> AppClassLoader), and in the process of thread execution, the `client` 
> actually created by isolatedClassLoader, in the process of obtaining 
> `RawStore` instance through `HiveMetaStore.HMSHandler#getMSForConf`, the `ms` 
> instance is set to `threadLocalMS`, but the static `threadLocalMS` instance 
> belongs to `HMSHandler`(loaded by IsolatedClassLoader$$anon$1), that is, the 
> set and get methods do not operate on the same `threadLocalMS` instance, so 
> in `ThreadWithGarbageCleanup#cacheThreadLocalRawStore` method, the obtained 
> `RawStore` instance is null, so the subsequent `RawStore` cleaning logic does 
> not take effect, because the `shutdown` method of `RawStore` instance is not 
> called, resulting in `pmCache` of `JDOPersistenceManagerFactory` memory leak.
> Long-running Spark ThriftServer end up with frequent GCs, resulting in poor 
> performance.
> I analyzed the heap dump using MAT and executed the following OQL: `SELECT * 
> FROM INSTANCEOF java.lang.Class c WHERE [email protected]("class 
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler ")`, two instances 
> of the `HMSHandler` *Class* can be found in the heap. Also know that they 
> each hold a static `threadLocalMS` instance.
> We execute the following OQL: `select * from 
> org.datanucleus.api.jdo.JDOPersistenceManagerFactory`, we can see that the 
> `pmCache` of the `JDOPersistenceManagerFactory` instance occupies 1.3GB of 
> memory.
> We execute the following OQL: `SELECT * FROM INSTANCEOF java.lang.Class c 
> WHERE [email protected]("class 
> org.apache.hive.service.server.ThreadFactoryWithGarbageCleanup")`, we can see 
> that there is no element in the static instance `threadRawStoreMap` of 
> `ThreadFactoryWithGarbageCleanup`, which confirms the above statement, 
> because `HMSHandler.getRawStore()` in 
> `ThreadWithGarbageCleanup#cacheThreadLocalRawStore` is called on the 
> `threadLocalMS` instance in `HMSHandler`(loaded by AppClassLoader) instead of 
> `threadLocalMS` instance in `HMSHandler`(loaded by 
> IsolatedClassLoader$$anon$1).



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