[ 
https://issues.apache.org/jira/browse/SPARK-7898?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Sam Steingold updated SPARK-7898:
---------------------------------
    Description: 
When I type 
{code}
hadoop fs -text /foo/bar/baz.bz2 2>err 1>out
{code}

I get two non-empty files: {{err}} with 
{code}
2015-05-26 15:33:49,786 INFO  [main] bzip2.Bzip2Factory 
(Bzip2Factory.java:isNativeBzip2Loaded(70)) - Successfully loaded & initialized 
native-bzip2 library system-native
2015-05-26 15:33:49,789 INFO  [main] compress.CodecPool 
(CodecPool.java:getDecompressor(179)) - Got brand-new decompressor [.bz2]
{code}
and {{out}} with the content of the file (as expected).

When I call the same command from Python (2.6):

{code}
from subprocess import Popen
with open("out","w") as out:
    with open("err","w") as err:
        p = Popen(['hadoop','fs','-text',"/foo/bar/baz.bz2"],
                  stdin=None,stdout=out,stderr=err)
print p.wait()
{code}
I get the exact same (correct) behavior.

*However*, when I run the same code under *PySpark* (or using 
{{spark-submit}}), I get an *empty* {{err}} file and the {{out}} file starts 
with the log messages above (and then it contains the actual data).

  was:
When I type 
{code}
hadoop fs -text /foo/bar/baz.bz2 2>err 1>out
{code}

I get two non-empty files: {{err}} with 
{code}
2015-05-26 15:33:49,786 INFO  [main] bzip2.Bzip2Factory 
(Bzip2Factory.java:isNativeBzip2Loaded(70)) - Successfully loaded & initialized 
native-bzip2 library system-native
2015-05-26 15:33:49,789 INFO  [main] compress.CodecPool 
(CodecPool.java:getDecompressor(179)) - Got brand-new decompressor [.bz2]
{code}
and {{out}} with the content of the file (as expected).

When I call the same command from Python (2.6):

{code}
from subprocess import Popen
with open("out","w") as out:
    with open("err","w") as err:
        p = Popen(['hadoop','fs','-text',"/foo/bar/baz.bz2"],
                  stdin=None,stdout=out,stderr=err)
print p.wait()
{code}
I get the exact same (correct) behavior.

*However*, when I run the same code under *PySpark* (or using `spark-submit`), 
I get an *empty* {{err}} file and the {{out}} file starts with the log messages 
above (and then it contains the actual data).


> pyspark merges stderr into stdout
> ---------------------------------
>
>                 Key: SPARK-7898
>                 URL: https://issues.apache.org/jira/browse/SPARK-7898
>             Project: Spark
>          Issue Type: Bug
>          Components: PySpark
>    Affects Versions: 1.3.0
>            Reporter: Sam Steingold
>
> When I type 
> {code}
> hadoop fs -text /foo/bar/baz.bz2 2>err 1>out
> {code}
> I get two non-empty files: {{err}} with 
> {code}
> 2015-05-26 15:33:49,786 INFO  [main] bzip2.Bzip2Factory 
> (Bzip2Factory.java:isNativeBzip2Loaded(70)) - Successfully loaded & 
> initialized native-bzip2 library system-native
> 2015-05-26 15:33:49,789 INFO  [main] compress.CodecPool 
> (CodecPool.java:getDecompressor(179)) - Got brand-new decompressor [.bz2]
> {code}
> and {{out}} with the content of the file (as expected).
> When I call the same command from Python (2.6):
> {code}
> from subprocess import Popen
> with open("out","w") as out:
>     with open("err","w") as err:
>         p = Popen(['hadoop','fs','-text',"/foo/bar/baz.bz2"],
>                   stdin=None,stdout=out,stderr=err)
> print p.wait()
> {code}
> I get the exact same (correct) behavior.
> *However*, when I run the same code under *PySpark* (or using 
> {{spark-submit}}), I get an *empty* {{err}} file and the {{out}} file starts 
> with the log messages above (and then it contains the actual data).



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