Dmytro Bielievtsov created SPARK-10872: ------------------------------------------
Summary: Derby error (XSDB6) when creating new HiveContext after restarting SparkContext Key: SPARK-10872 URL: https://issues.apache.org/jira/browse/SPARK-10872 Project: Spark Issue Type: Bug Components: PySpark, SQL Affects Versions: 1.5.0, 1.4.1, 1.4.0 Reporter: Dmytro Bielievtsov Starting from spark 1.3.1, the following code fails with "XSDB6: Another instance of Derby may have already booted the database ~/metastore_db": {code:python} from pyspark import SparkContext, HiveContext sc = SparkContext("local[*]", "app1") sql = HiveContext(sc) sql.createDataFrame([[1]]).collect() sc.stop() sc = SparkContext("local[*]", "app2") sql = HiveContext(sc) sql.createDataFrame([[1]]).collect() # Py4J error {code} This is related to [#SPARK-9539], and I intend to restart spark context several times for isolated jobs to prevent cache cluttering and GC errors. Here's a larger part of the full error trace: {noformat} Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@13015ec0, see the next exception for details. org.datanucleus.exceptions.NucleusDataStoreException: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@13015ec0, see the next exception for details. at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:516) at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631) at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301) at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187) at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356) at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775) at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333) at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965) at java.security.AccessController.doPrivileged(Native Method) at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960) at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166) at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808) at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701) at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365) at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394) at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291) at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57) at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461) at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66) at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72) at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762) at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199) at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104) at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005) at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024) at org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234) at org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174) at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166) at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503) at org.apache.spark.sql.hive.client.ClientWrapper.<init>(ClientWrapper.scala:171) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at org.apache.spark.sql.hive.client.IsolatedClientLoader.liftedTree1$1(IsolatedClientLoader.scala:183) at org.apache.spark.sql.hive.client.IsolatedClientLoader.<init>(IsolatedClientLoader.scala:179) at org.apache.spark.sql.hive.HiveContext.metadataHive$lzycompute(HiveContext.scala:227) at org.apache.spark.sql.hive.HiveContext.metadataHive(HiveContext.scala:186) at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:393) at org.apache.spark.sql.hive.HiveContext.defaultOverrides(HiveContext.scala:175) at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:178) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:234) at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:379) at py4j.Gateway.invoke(Gateway.java:214) at py4j.commands.ConstructorCommand.invokeConstructor(ConstructorCommand.java:79) at py4j.commands.ConstructorCommand.execute(ConstructorCommand.java:68) at py4j.GatewayConnection.run(GatewayConnection.java:207) at java.lang.Thread.run(Thread.java:745) Caused by: java.sql.SQLException: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@13015ec0, see the next exception for details. at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source) at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source) at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source) at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source) at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source) at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source) at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source) at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source) at org.apache.derby.jdbc.Driver20.connect(Unknown Source) at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source) at java.sql.DriverManager.getConnection(DriverManager.java:571) at java.sql.DriverManager.getConnection(DriverManager.java:187) at org.apache.commons.dbcp.DriverManagerConnectionFactory.createConnection(DriverManagerConnectionFactory.java:78) at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:582) at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:1148) at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:106) at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501) ... 76 more Caused by: java.sql.SQLException: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@13015ec0, see the next exception for details. at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source) at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source) ... 93 more Caused by: java.sql.SQLException: Another instance of Derby may have already booted the database /home/dmytro/work/shared_store/integration/metastore_db. at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source) at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source) at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source) at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source) ... 90 more Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database /home/dmytro/work/shared_store/integration/metastore_db. at org.apache.derby.iapi.error.StandardException.newException(Unknown Source) at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.privGetJBMSLockOnDB(Unknown Source) at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.getJBMSLockOnDB(Unknown Source) at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.boot(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source) at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source) at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source) at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source) at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source) at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source) at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source) at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source) at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source) at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source) at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source) at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown Source) at org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown Source) at org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown Source) ... 90 more {noformat} Same happens in Scala. -- This message was sent by Atlassian JIRA (v6.3.4#6332) --------------------------------------------------------------------- To unsubscribe, e-mail: issues-unsubscr...@spark.apache.org For additional commands, e-mail: issues-h...@spark.apache.org