[
https://issues.apache.org/jira/browse/SPARK-12179?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15046243#comment-15046243
]
Tao Li edited comment on SPARK-12179 at 12/8/15 3:00 AM:
---------------------------------------------------------
I see there was some exceptions in my executors stderr log:
15/12/08 00:47:44 INFO broadcast.TorrentBroadcast: Started reading broadcast
variable 24
15/12/08 00:47:44 INFO storage.MemoryStore: ensureFreeSpace(45407) called with
curMem=417720, maxMem=2893440614
15/12/08 00:47:44 INFO storage.MemoryStore: Block broadcast_24_piece0 stored as
bytes in memory (estimated size 44.3 KB, free 2.7 GB)
15/12/08 00:47:44 INFO broadcast.TorrentBroadcast: Reading broadcast variable
24 took 34 ms
15/12/08 00:47:44 INFO storage.MemoryStore: ensureFreeSpace(527088) called with
curMem=463127, maxMem=2893440614
15/12/08 00:47:44 INFO storage.MemoryStore: Block broadcast_24 stored as values
in memory (estimated size 514.7 KB, free 2.7 GB)
15/12/08 00:47:44 WARN conf.Configuration:
org.apache.hadoop.hive.conf.LoopingByteArrayInputStream@661ec4ee:an attempt to
override final parameter: mapreduce.reduce.speculative; Ignoring.
15/12/08 00:47:45 INFO metastore.HiveMetaStore: 0: Opening raw store with
implemenation class:org.apache.hadoop.hive.metastore.ObjectStore
15/12/08 00:47:45 INFO metastore.ObjectStore: ObjectStore, initialize called
15/12/08 00:47:45 WARN metastore.HiveMetaStore: Retrying creating default
database after error: Class
org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found.
javax.jdo.JDOFatalUserException: Class
org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found.
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at
org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at
org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
at
org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureJobPropertiesForStorageHandler(PlanUtils.java:803)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureInputJobPropertiesForStorageHandler(PlanUtils.java:782)
at
org.apache.spark.sql.hive.HadoopTableReader$.initializeLocalJobConfFunc(TableReader.scala:298)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at scala.Option.map(Option.scala:145)
at org.apache.spark.rdd.HadoopRDD.getJobConf(HadoopRDD.scala:176)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:220)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:216)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:101)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at org.apache.spark.rdd.UnionRDD.compute(UnionRDD.scala:87)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:88)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
NestedThrowablesStackTrace:
java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at java.lang.ClassLoader.findClass(ClassLoader.java:531)
at
org.apache.spark.util.ParentClassLoader.findClass(ParentClassLoader.scala:26)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:34)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:30)
at
org.apache.spark.repl.ExecutorClassLoader$$anonfun$findClass$1.apply(ExecutorClassLoader.scala:61)
at
org.apache.spark.repl.ExecutorClassLoader$$anonfun$findClass$1.apply(ExecutorClassLoader.scala:61)
at scala.Option.getOrElse(Option.scala:120)
at
org.apache.spark.repl.ExecutorClassLoader.findClass(ExecutorClassLoader.scala:61)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:270)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2018)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2016)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.forName(JDOHelper.java:2015)
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1162)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at
org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at
org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
at
org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureJobPropertiesForStorageHandler(PlanUtils.java:803)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureInputJobPropertiesForStorageHandler(PlanUtils.java:782)
at
org.apache.spark.sql.hive.HadoopTableReader$.initializeLocalJobConfFunc(TableReader.scala:298)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at scala.Option.map(Option.scala:145)
at org.apache.spark.rdd.HadoopRDD.getJobConf(HadoopRDD.scala:176)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:220)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:216)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:101)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at org.apache.spark.rdd.UnionRDD.compute(UnionRDD.scala:87)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:88)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
15/12/08 00:47:45 INFO metastore.HiveMetaStore: 0: Opening raw store with
implemenation class:org.apache.hadoop.hive.metastore.ObjectStore
15/12/08 00:47:45 INFO metastore.ObjectStore: ObjectStore, initialize called
15/12/08 00:47:45 WARN metadata.Hive: Failed to access metastore. This class
should not accessed in runtime.
org.apache.hadoop.hive.ql.metadata.HiveException: java.lang.RuntimeException:
Unable to instantiate
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at
org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1236)
at
org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureJobPropertiesForStorageHandler(PlanUtils.java:803)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureInputJobPropertiesForStorageHandler(PlanUtils.java:782)
at
org.apache.spark.sql.hive.HadoopTableReader$.initializeLocalJobConfFunc(TableReader.scala:298)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at scala.Option.map(Option.scala:145)
at org.apache.spark.rdd.HadoopRDD.getJobConf(HadoopRDD.scala:176)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:220)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:216)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:101)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at org.apache.spark.rdd.UnionRDD.compute(UnionRDD.scala:87)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:88)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.RuntimeException: Unable to instantiate
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1523)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at
org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
... 38 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
... 44 more
Caused by: javax.jdo.JDOFatalUserException: Class
org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found.
NestedThrowables:
java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at
org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
... 49 more
Caused by: java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at java.lang.ClassLoader.findClass(ClassLoader.java:531)
at
org.apache.spark.util.ParentClassLoader.findClass(ParentClassLoader.scala:26)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:34)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:30)
at
org.apache.spark.repl.ExecutorClassLoader$$anonfun$findClass$1.apply(ExecutorClassLoader.scala:61)
at
org.apache.spark.repl.ExecutorClassLoader$$anonfun$findClass$1.apply(ExecutorClassLoader.scala:61)
at scala.Option.getOrElse(Option.scala:120)
at
org.apache.spark.repl.ExecutorClassLoader.findClass(ExecutorClassLoader.scala:61)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:270)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2018)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2016)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.forName(JDOHelper.java:2015)
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1162)
... 68 more
15/12/08 00:47:45 INFO orc.OrcRawRecordMerger: min key = null, max key = null
was (Author: litao1990):
I see there was some exceptions in my executors stderr log:
```
15/12/08 00:47:44 INFO broadcast.TorrentBroadcast: Started reading broadcast
variable 24
15/12/08 00:47:44 INFO storage.MemoryStore: ensureFreeSpace(45407) called with
curMem=417720, maxMem=2893440614
15/12/08 00:47:44 INFO storage.MemoryStore: Block broadcast_24_piece0 stored as
bytes in memory (estimated size 44.3 KB, free 2.7 GB)
15/12/08 00:47:44 INFO broadcast.TorrentBroadcast: Reading broadcast variable
24 took 34 ms
15/12/08 00:47:44 INFO storage.MemoryStore: ensureFreeSpace(527088) called with
curMem=463127, maxMem=2893440614
15/12/08 00:47:44 INFO storage.MemoryStore: Block broadcast_24 stored as values
in memory (estimated size 514.7 KB, free 2.7 GB)
15/12/08 00:47:44 WARN conf.Configuration:
org.apache.hadoop.hive.conf.LoopingByteArrayInputStream@661ec4ee:an attempt to
override final parameter: mapreduce.reduce.speculative; Ignoring.
15/12/08 00:47:45 INFO metastore.HiveMetaStore: 0: Opening raw store with
implemenation class:org.apache.hadoop.hive.metastore.ObjectStore
15/12/08 00:47:45 INFO metastore.ObjectStore: ObjectStore, initialize called
15/12/08 00:47:45 WARN metastore.HiveMetaStore: Retrying creating default
database after error: Class
org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found.
javax.jdo.JDOFatalUserException: Class
org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found.
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at
org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at
org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
at
org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureJobPropertiesForStorageHandler(PlanUtils.java:803)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureInputJobPropertiesForStorageHandler(PlanUtils.java:782)
at
org.apache.spark.sql.hive.HadoopTableReader$.initializeLocalJobConfFunc(TableReader.scala:298)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at scala.Option.map(Option.scala:145)
at org.apache.spark.rdd.HadoopRDD.getJobConf(HadoopRDD.scala:176)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:220)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:216)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:101)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at org.apache.spark.rdd.UnionRDD.compute(UnionRDD.scala:87)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:88)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
NestedThrowablesStackTrace:
java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at java.lang.ClassLoader.findClass(ClassLoader.java:531)
at
org.apache.spark.util.ParentClassLoader.findClass(ParentClassLoader.scala:26)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:34)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:30)
at
org.apache.spark.repl.ExecutorClassLoader$$anonfun$findClass$1.apply(ExecutorClassLoader.scala:61)
at
org.apache.spark.repl.ExecutorClassLoader$$anonfun$findClass$1.apply(ExecutorClassLoader.scala:61)
at scala.Option.getOrElse(Option.scala:120)
at
org.apache.spark.repl.ExecutorClassLoader.findClass(ExecutorClassLoader.scala:61)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:270)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2018)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2016)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.forName(JDOHelper.java:2015)
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1162)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at
org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at
org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
at
org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureJobPropertiesForStorageHandler(PlanUtils.java:803)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureInputJobPropertiesForStorageHandler(PlanUtils.java:782)
at
org.apache.spark.sql.hive.HadoopTableReader$.initializeLocalJobConfFunc(TableReader.scala:298)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at scala.Option.map(Option.scala:145)
at org.apache.spark.rdd.HadoopRDD.getJobConf(HadoopRDD.scala:176)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:220)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:216)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:101)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at org.apache.spark.rdd.UnionRDD.compute(UnionRDD.scala:87)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:88)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
15/12/08 00:47:45 INFO metastore.HiveMetaStore: 0: Opening raw store with
implemenation class:org.apache.hadoop.hive.metastore.ObjectStore
15/12/08 00:47:45 INFO metastore.ObjectStore: ObjectStore, initialize called
15/12/08 00:47:45 WARN metadata.Hive: Failed to access metastore. This class
should not accessed in runtime.
org.apache.hadoop.hive.ql.metadata.HiveException: java.lang.RuntimeException:
Unable to instantiate
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at
org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1236)
at
org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureJobPropertiesForStorageHandler(PlanUtils.java:803)
at
org.apache.hadoop.hive.ql.plan.PlanUtils.configureInputJobPropertiesForStorageHandler(PlanUtils.java:782)
at
org.apache.spark.sql.hive.HadoopTableReader$.initializeLocalJobConfFunc(TableReader.scala:298)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.sql.hive.HadoopTableReader$$anonfun$12.apply(TableReader.scala:274)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at
org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$6.apply(HadoopRDD.scala:176)
at scala.Option.map(Option.scala:145)
at org.apache.spark.rdd.HadoopRDD.getJobConf(HadoopRDD.scala:176)
at org.apache.spark.rdd.HadoopRDD$$anon$1.<init>(HadoopRDD.scala:220)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:216)
at org.apache.spark.rdd.HadoopRDD.compute(HadoopRDD.scala:101)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at org.apache.spark.rdd.UnionRDD.compute(UnionRDD.scala:87)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:300)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:88)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.RuntimeException: Unable to instantiate
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1523)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at
org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
... 38 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
... 44 more
Caused by: javax.jdo.JDOFatalUserException: Class
org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found.
NestedThrowables:
java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at
org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
... 49 more
Caused by: java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at java.lang.ClassLoader.findClass(ClassLoader.java:531)
at
org.apache.spark.util.ParentClassLoader.findClass(ParentClassLoader.scala:26)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:34)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:30)
at
org.apache.spark.repl.ExecutorClassLoader$$anonfun$findClass$1.apply(ExecutorClassLoader.scala:61)
at
org.apache.spark.repl.ExecutorClassLoader$$anonfun$findClass$1.apply(ExecutorClassLoader.scala:61)
at scala.Option.getOrElse(Option.scala:120)
at
org.apache.spark.repl.ExecutorClassLoader.findClass(ExecutorClassLoader.scala:61)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:270)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2018)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2016)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.forName(JDOHelper.java:2015)
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1162)
... 68 more
15/12/08 00:47:45 INFO orc.OrcRawRecordMerger: min key = null, max key = null
```
> Spark SQL get different result with the same code
> -------------------------------------------------
>
> Key: SPARK-12179
> URL: https://issues.apache.org/jira/browse/SPARK-12179
> Project: Spark
> Issue Type: Bug
> Components: Spark Core, SQL
> Affects Versions: 1.3.0, 1.3.1, 1.3.2, 1.4.0, 1.4.1, 1.4.2, 1.5.0, 1.5.1,
> 1.5.2, 1.5.3
> Environment: hadoop version: 2.5.0-cdh5.3.2
> spark version: 1.5.3
> run mode: yarn-client
> Reporter: Tao Li
> Priority: Critical
>
> I run the sql in yarn-client mode, but get different result each time.
> As you can see the example, I get the different shuffle write with the same
> shuffle read in two jobs with the same code.
> Some of my spark app runs well, but some always met this problem. And I met
> this problem on spark 1.3, 1.4 and 1.5 version.
> Can you give me some suggestions about the possible causes or how do I figure
> out the problem?
> 1. First Run
> Details for Stage 9 (Attempt 0)
> Total Time Across All Tasks: 5.8 min
> Shuffle Read: 24.4 MB / 205399
> Shuffle Write: 6.8 MB / 54934
> 2. Second Run
> Details for Stage 9 (Attempt 0)
> Total Time Across All Tasks: 5.6 min
> Shuffle Read: 24.4 MB / 205399
> Shuffle Write: 6.8 MB / 54905
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