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https://issues.apache.org/jira/browse/SPARK-12148?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15202376#comment-15202376
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Anupama Joshi edited comment on SPARK-12148 at 3/18/16 11:48 PM:
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Run the code in this sequence to reproduce the issue -
library(plyr)
library(dplyr)
library(DESeq2)
library(pheatmap)
library(gplots)
library(RColorBrewer)
library(matrixStats)
library(pheatmap)
library(ggplot2)
library(hexbin)
library(corrplot)
countData <- matrix(1:100,ncol=4)
condition <- factor(c("A","A","B","B"))
dds <- DESeqDataSetFromMatrix(countData, as.data.frame(condition), ~ condition)
# This line loads SparkR from the installed directory
.libPaths(c(file.path(Sys.getenv("SPARK_HOME"), "R", "lib"), .libPaths()))
library(SparkR)
sc <- sparkR.init(master="local")
countData <- matrix(1:100,ncol=4)
condition <- factor(c("A","A","B","B"))
dds <- DESeqDataSetFromMatrix(countData, as.data.frame(condition), ~ condition)
Not using any thing from sparkR .
was (Author: ajohi):
Run the code in this sequence to reproduce the issue -
> SparkR: rename DataFrame to SparkDataFrame
> ------------------------------------------
>
> Key: SPARK-12148
> URL: https://issues.apache.org/jira/browse/SPARK-12148
> Project: Spark
> Issue Type: Sub-task
> Components: SparkR
> Reporter: Michael Lawrence
>
> The SparkR package represents a Spark DataFrame with the class "DataFrame".
> That conflicts with the more general DataFrame class defined in the S4Vectors
> package. Would it not be more appropriate to use the name "SparkDataFrame"
> instead?
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