Okay so I had been compiling the .java files on command prompt via ant, it 
created the .class files and the report was generated which gave me the 
LINE_MISSED and LINE_COVERED as 0

Now, I compiled the classes in Eclipse itself and copied them to the point 
where ant starts creating the jar using the .class files. 
Surprisingly, the file created now has the line numbers mentioned correctly.
 
Why is this happening? 


<target name="compile">
   <mkdir dir="${classes.dir}"/>
   <javac srcdir="${src.dir}" destdir="${classes.dir}" 
includeantruntime="false">
        <classpath>
            <pathelement location="C:/JUnit/apache-ant-1.10.1/src"/>
            <path refid="classpath"/>
        </classpath>
        <compilerarg value="-Xlint"/>
        <compilerarg line="-Xmaxerrs 10000" />
   </javac>
</target>


<target name="jar">
    <mkdir dir="${jar.dir}"/>
    <jar destfile="${jar.dir}/${ant.project.name}.jar" 
basedir="${classes.dir}"> 
            <manifest>
                <attribute name="Main-Class" value="${main-class}"/>
            </manifest>
     </jar>
</target>

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