Thanks Jim! I used a combo of options 1 and 2. I downloaded all the required jars from http://www.jalview.org/webstart/ , and then packaged them up into a WAR file with our servlet that creates a JNLP to fire up Jalview with our groovy startup script and custom jalview.properties.
As always, thanks for your great support! Joni -- Plant and Computational Genomics Group Joint Genome Institute - U.S. Dept. of Energy http://www.phytozome.net On Wed, Oct 5, 2011 at 12:45 AM, Jim Procter <[email protected]>wrote: > Hi Joni. > > > On 04/10/2011 22:52, Joni Fazo wrote: > >> I downloaded Jalview 2.7 source today and have started integrating it with >> the Phytozome system. So far everything looks great! >> > glad to hear it, and I'd be interested in checking out the latest phytozome > when its available! > > >> The only hitch I've run into is that the build.xml still sets the version >> of Jalview to "DEVELOPMENT". I've changed it for my local build to "2.7", >> but ideally we would like to work with a version of the Jalview that is >> completely unmodified. Would it be possible for you to make this change? >> > The version not coded in the source, but is intentionally a build time > configurable property - both the build date and version are recorded in the > jalview.jar when the ant task creates it. You've basically got 3 options > here: > > 1. If you simply want to take an existing, unmodified version of jalview, > then I suggest you download the jars at > http://www.jalview.org/**webstart/<http://www.jalview.org/webstart/>, > since these have been produced using the standard production build pipeline. > That's almost certainly the simplest approach, and one that has been used by > other sites. > 2. If you don't want to add any new Java code to Jalview then you could > even get away with a custom JNLP which launches jalview from > www.jalview.org but passes in your own groovy script arguments. > 3.Alternately, 'ant -propertyfile RELEASE makedist' in the jalview source > directory will build a jalview.jar with the correct version. Note, however, > that if you do this, the build time will be different, but this might be > useful to you. > > Take your pick! > Jim. > >
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