Jim, I cannot attend to Oxford workshop, though I would like to. I contribute to Jalview only at my free-time (that's why my contributions are so tiny) and I have no vacations nor budget to go there. Will it be possible to attend by videoconference? May I send you slides for a session about how to develop i18n-compliant code?
Cheers, D. 2013/11/26 Jim Procter <[email protected]> > Hi David. > > On 25/11/2013 17:03, David Roldán Martínez wrote: > > I would like to start my first contact with Jalview development in > > deep with a BED parser. I've seend BED file format and seems quite > > easy to parse so I think I can manage on my own with the parsing but > > my problem is that I don't where to store parsed information. Any > > suggestion? > I presume by BED you mean this format: > http://genome.ucsc.edu/FAQ/FAQformat.html#format1 > > It would be quite useful to be able to parse these kind of files, but > since they are designed for UCSC, it isn't as simple as 'implement a > tabbed file parser'. BED data files conventionally generate annotation > tracks, so you would need to implement a datamodel renderer that > generates Jalview style annotation tracks from BED files. > > As ever, however, the first thing to do is create a new feature on > issues.jalview.org for this, so we can discuss details over there. I've > a feeling this might become an EPIC, though, since being able to read > and write BED files could be very useful for people who want to publish > data to UCSC, or import from UCSC. > > This would also make a great Hackathon topic to work on in Oxford on day > 2 of the workshop! > > Jim. > > _______________________________________________ > Jalview-dev mailing list > [email protected] > http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >
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