Hi Sebastien.

Thanks for letting me know.

Now that I actually have 1.7r51, I've been going through all the 
combinations to see what are the most useful jalviewApplet jars to 
provide, and I found that using <param permissions="sandbox"/> in the 
applet tag, and Permissions: sandbox in the manifest, whilst dropping 
any of the trusted library tags, yields the minimum number of warnings. 
Specifying sandbox is important for use of Jmol via Jalview.

Please try this version out at 
http://www.jalview.org/builds/release/examples/applets.html

The Manifest tags I used are:

Manifest-Version: 1.0
Ant-Version: Apache Ant 1.8.4
Application-Library-Allowable-Codebase: *
Application-Name: JalviewLite
Permissions: sandbox
Created-By: 1.7.0_09-b05 (Oracle Corporation)
Caller-Allowable-Codebase: *
Main-Class: jalview.bin.JalviewLite
Codebase: *


In principle, you should be able to reuse this jar directly on SIB, too 
- I'd appreciate it if you can give it a try. If it works OK for you 
then I'll push this as the default version available from 
www.jalview.org (formally, this will be release 2.8b1 - until we get 
2.8.1 out the door in a few weeks).

Jim.

Sébastien Moretti wrote:
> Hi Jim
>
> just to let you know that I have temporarily signed the jalview applet 
> we use in Selectome with the "SIB Swiss Institute of Bioinformatics" 
> certificate.
> With java 1.7.0_51 the applet did not work anymore.
>
>
> I also used this manifest attributes:
>
> Application-Name: JalView
> Permissions: all-permissions
> Codebase: *.unil.ch
> Caller-Allowable-Codebase: *.unil.ch
> Trusted-Library: true
> Trusted-Only: false
> Main-Class: jalview.bin.JalviewLite
>
>
> Best regards
>

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