Hi Seb. cc-ing jalview-dev...
On Thu Sep 11 19:59:42 2014, Sebastian Wilzbach wrote: > How do you imagine the "MSA Viewer HTML output" mode for the Jalview desktop > to work? Jalview would provide an export option that could either: * write a single html page with bundled JSON/BSON data * write a series of files: html page with references to local JSON/BSON files The questions in my mind are: 1. should a bundled version of the BioJS msaviewer + dependencies be shipped with Jalview ? -> alternative is to include external references to minified code 2. are the JSON/BSON structures employed by msaviewer sufficiently standard that we can commit time to create new parsers/emitters in Jalview ? -> That would mean that we could also import data + visualisation settings from an existing msaviewer-enabled page. -> alternately, we just write vanilla alignment, sequence feature and alignment annotation files and improve msaviewer so its compatible with Jalview's standard formats. > I would be glad to help you. :) The relevant Jalview issue is here: http://issues.jalview.org/browse/JAL-1541 Jim. _______________________________________________ Jalview-dev mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
