I've pushed features/SequenceFeatureRefactor (forked off develop) to the server.


http://issues.jalview.org/browse/JAL-1665


I've tested most of the changes manually as per comments in JIRA.

A few details I'm not sure of:

  *   ?desktop PopupMenu how to test add sequence features to Links sub-menu
  *   not tested output as JSON as not integrated in this branch
  *   not sure how to test StockholmFile.print() - haven't changed code in here 
yet
  *   not sure how to test Vamsas code, DBRefFetcher.transferReferences , 
PDBChain.transferRESNUMFeatures  (but no changes here, should just be a 
regression test check)
  *   TreePanel.changeNames - looks like an orphaned and possibly broken method?


Mungo


Mungo Carstairs
Jalview Computational Scientist
The Barton Group
Division of Computational Biology
College of Life Sciences
University of Dundee, Dundee, Scotland, UK.
www.jalview.org<http://www.jalview.org/>
www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk/>

The University of Dundee is a registered Scottish Charity, No: SC015096
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