Hi Mungo On 23/08/2016 09:36, Mungo Carstairs (Staff) wrote: > AlignFrame.showSeqFeaturesHeight_actionPerformed() doesn't seem to be > used - delete?
showSeqFeaturesHeight was an experiment where the feature score was encoded as the height of the coloured block overlaid on a sequence to represent the feature. After playing with it for a bit with proteomic data, I realised the visual encoding model doesn't work well - it's hard to distinguish height differences for vertically aligned features. It's OK to remove the alignFrame action method, but I'm tempted to leave the height-scale functionality in the FeatureRenderer. At least for the next wave of refactoring. Jim -- ------------------------------------------------------------------- Dr JB Procter, Jalview Coordinator, The Barton Group Division of Computational Biology, School of Life Sciences University of Dundee, Dundee DD1 5EH, UK. +44 1382 388734 | www.jalview.org | www.compbio.dundee.ac.uk _______________________________________________ Jalview-dev mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
