Thanks for the summary - Will check tomorrow, and check in properly on Monday morning your time. Will aim for tidying up rc and pushing to release !
Jim. Sent from my Cyanogen phone On Jun 16, 2017 7:14 PM, "Mungo Carstairs (Staff)" <[email protected]> wrote: and with the right link: https://issues.jalview.org/issues/?filter=10613&jql=project%20%3D%20JAL%20AND%20status%20in%20(%22In%20Progress%22%2C%20%22Ready%20for%20testing%22%2C%20%22Being%20tested%22)%20AND%20fixVersion%20%3D%202.10.2%20ORDER%20BY%20status%20DESC%2C%20assignee%20DESC%2C%20createdDate%20DESC ________________________________ From: [email protected] <[email protected]> on behalf of Mungo Carstairs (Staff) <[email protected]> Sent: 15 June 2017 14:47:22 To: Jalview Development List Subject: Re: [Jalview-dev] Issues pending for 2.10.2 Updates as at Thursday afternoon UK time. https://issues.jalview.org/browse/JAL-2563?filter=10613&jql=project%20%3D%20JAL%20AND%20status%20in%20(%22In%20Progress%22%2C%20%22Ready%20for%20testing%22%2C%20%22Being%20tested%22)%20AND%20fixVersion%20%3D%202.10.2%20ORDER%20BY%20status%20DESC%2C%20priority%20DESC%2C%20key%20DESC%2C%20fixVersion%20ASC%2C%20assignee%20DESC%2C%20createdDate%20DESC All branches merged to develop: * JAL-1648,JAL-2386 (includes JAL-2570), JAL-2589, JAL-2591, JAL-2594 Functional tests all passing except for CrossRefTest (expected). Ant build makeapplet successful locally, build successful on build server, applet launched ok from server. Being tested * JAL-2034 Overview Window refresh for selection, JAL-2563 show 'B' position in status bar * assigned to Jim, on develop - ready to sign off? Ready for test * JAL-2295/6 Chimera feature exchange - 3 Unresolved comments in Review * JAL-2429 findColumnPosition and hidden columns - can you sign this off Jim? In Progress Blockers: * JAL-2116 Java 9 testing - with Jim? * JAL-2321 drop pdb structure on sequence - no progress, bump? * JAL-2597 missing inserts - can't reproduce Release notes: * Don't seem to include issues 'Being Tested' other than JAL-2563 show ambiguous residue in status bar, experimental Chimera features * Is this still in progress? I didn't find * JAL-2379 (>30x speed and memory improvement for large PCA) * JAL-1632 (new Tree/PCA dialog) * JAL-2435 option to mirror fonts in split screen * JAL-2416 ability to drag a score matrix onto an alignment * JAL-2589 overview (with features) custom gap colour * and a few other (even) more obscure bug fixes Mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> [email protected]<mailto:[email protected]> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 ________________________________ From: [email protected] <[email protected]> on behalf of Jim Procter <[email protected]> Sent: 14 June 2017 13:57:14 To: Jalview Development List Subject: Re: [Jalview-dev] Issues pending for 2.10.2 All slated for 2.10.2 must be merged. Blockers affecting 2.10.2 need to be fixed too. On 12/06/2017 18:51, Mungo Carstairs (Staff) wrote: A quick review of Being Tested or Ready for Test for 2.10.2, in case any are considered critical and missing from the release candidate. https://issues.jalview.org/issues/?filter=10613&jql=project%20%3D%20JAL%20AND%20status%20in%20(%22Ready%20for%20testing%22%2C%20%22Being%20tested%22)%20AND%20fixVersion%20%3D%202.10.2%20ORDER%20BY%20key%20ASC%2C%20fixVersion%20ASC%2C%20status%20DESC%2C%20assignee%20DESC%2C%20createdDate%20DESC<https://issues.jalview.org/issues/?filter=10613&jql=project%20%3D%20JAL%20AND%20status%20in%20%28%22Ready%20for%20testing%22%2C%20%22Being%20tested%22%29%20AND%20fixVersion%20%3D%202.10.2%20ORDER%20BY%20key%20ASC%2C%20fixVersion%20ASC%2C%20status%20DESC%2C%20assignee%20DESC%2C%20createdDate%20DESC> On develop (I think) JAL-2034 overview updates for selection JAL-2295/6 Chimera-Jalview features exchange (need EXPERIMENTAL=true in Preferences file) JAL-2429 findColumnPosition and hidden columns JAL-2551 group colour on resize JAL-2563 show 'B' in status bar JAL-2577 hide columns by annotation threshold in split frame Are these noted in the release notes ? Nothing that hasn't already been tested should be. On a branch JAL-1648 remember free text queries JAL-2386, JAL-2570 (group colour schemes) - both fixes on bug/JAL-2386 JAL-2589 render custom gap colour - on bug/JAL-2589 branch JAL-2591 race condition in overview window - bug/JAL-2591 JAL-2594 stack trace creating feature on gapped region (no user impact) Procedure for merging is: 1. merge onto your local develop 2. verify that what was tested really was passed. 3. verify that the original bug was actually addressed - not just that the tests pass. 4. Check the ant makeApplet build works locally - this usually catches package contamination issues (ant clean makeApplet to be sure). 5. if all goes well - push the merge to the build server. 6. Check the build really works again. If it was broken then you need to fix on the branch - since the commits are now public, they can't be taken back. If all good, issue can be resolved 7. resolved issues should then go into release notes. the message needs to be sanitized so it is comprehensible to an end user - issues often need to be merged. commits to the release notes go under the issue for doing the release: JAL-2418. We are doing a Jalview demo tomorrow - would be nice if the RC is functional ! Jim The University of Dundee is a registered Scottish Charity, No: SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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