Hi all, with the recent bioconda jalview installation I get for a call like this
jalview -nodisplay -open mRNA.fasta -feature mRNA_feature.txt -annotation mRNA_annotation.txt -svg mRNA.svg an output like that ######################### Java version: 1.8.0_121 amd64 Linux 2.6.32-696.18.7.el6.x86_64 Jalview Version: 2.10.3-1 (bioconda git-commit: []) CMD [-open mRNA.fasta] executed successfully! File format identified as Fasta Feb 18, 2018 5:55:40 PM jalview.util.MessageManager <clinit> INFO: Getting messages for lang: en_US java.awt.HeadlessException CMD [-annotations mRNA_annotation.txt] executed successfully! Written alignment in Fasta format to mRNA_feature.txt Creating SVG image: mRNA.svg ######################### I get the output I want but as far as I got the docu right, there shouldnt be any HeadlessException in -nodisplay mode.. right? Just to ping.. :) Thanks and best, Martin -- Dr. Martin Raden, nee Mann, Postdoc Bioinformatics - Prof. Dr. R. Backofen Department of Computer Science Albert-Ludwigs-University Freiburg Add: Georges-Koehler-Allee 106, room 02012, 79110 Freiburg, Germany Tel: ++49-761-203-8254 (Monday-Wednesday) Fax: ++49-761-203-7462 http://www.bioinf.uni-freiburg.de/~mmann/ Forest Growth and Dendroecology Institute of Forest Sciences Albert-Ludwigs-University Freiburg Add: Tennenbacher Str. 4, room 02062, 79106 Freiburg, Germany Tel: ++49-761-203-3733 (Thursday+Friday) Fax: ++49-761-203-3740 http://www.iww.uni-freiburg.de _______________________________________________ Jalview-dev mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
