JalviewModel -- right, sorry. I knew that. I was thinking there was a full
XML for an entire "state" but, right, there's a ZIP file that contains the
parts that go into the state. OK.
I need the GIT repository import URL for both Jalview 2.7 and this new
branch. Somehow my repository got completely disconnected.
Here is what we need to reproduce in JavaScript, from
JalviewModel$UserColours.class:
// Compiled from JalviewModel.java (version 1.8 : 52.0, super bit)
@javax.xml.bind.annotation.XmlAccessorType(value=javax.xml.bind.annotation.XmlAccessType.FIELD)
@javax.xml.bind.annotation.XmlType(name="",
propOrder={"userColourScheme"})
public static class jalview.xml.binding.jalview.JalviewModel$UserColours {
// Field descriptor #6 Ljava/lang/Object;
@javax.xml.bind.annotation.XmlElement(name="UserColourScheme",
namespace="www.jalview.org",
required=true)
protected java.lang.Object userColourScheme;
// Field descriptor #16 Ljava/lang/String;
@javax.xml.bind.annotation.XmlAttribute(name="id")
protected java.lang.String id;
On Thu, Sep 27, 2018 at 2:03 AM Jim Procter <[email protected]>
wrote:
> relevant issue:
>
> https://issues.jalview.org/browse/JAL-3063
>
> Branch is feature/JAL-3063JAXB
>
> The example project file is here:
>
> http://www.jalview.org/examples/exampleFile_2_7.jar
>
> That covers most aspects of the XML - its missing states for VARNA and
> CDS/Protein (and of course Chimera). Of course - ideally you'd run our
> Jalview2XML test suite to check all is working - but lets not go there...
>
> Jim.
>
>
>
> On 27/09/2018 02:40, Robert Hanson wrote:
>
> Jim, I'm ready to test at least the unmarshalling. Can you point me to:
>
> 1) A full JalviewModel XML object.
> 2) The link to that code branch so that I can check it out and test it on
> that.
>
>
> Thanks,
>
> Bob
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
> _______________________________________________
> Jalview-dev mailing
> [email protected]http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
>
>
> --
> -------------------------------------------------------------------
> Dr JB Procter, Jalview Coordinator, The Barton Group
> Division of Computational Biology, School of Life Sciences
> University of Dundee, Dundee DD1 5EH, UK.
> +44 1382 388734 | www.jalview.org | www.compbio.dundee.ac.uk
>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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