For info: we have discovered that Colour Picker dialogs are broken (don't appear) in the demo build (for example, to change a feature colour).
This has been fixed in development, along with other improvements (including save PCA in project). But I am going to err on the side of caution and test as thoroughly as possible before merging these changes on to the demo version. I'll send an update once this has been done. https://builds.jalview.org/artifact/JB-JB83/shared/build-latest/jalview-js-site/jalview_bin_Jalview.html Thanks, Mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> [email protected]<mailto:[email protected]> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 ________________________________ From: [email protected] <[email protected]> on behalf of Mungo Carstairs (Staff) <[email protected]> Sent: 28 January 2019 08:37:53 To: Jalview Development List; Geoffrey Barton (Staff) Subject: Re: [Jalview-dev] JalviewJS demonstration build Please note all that the URL is now https://builds.jalview.org/artifact/JB-JB83/shared/build-latest/jalview-js-site/jalview_bin_JalviewJS.html (81 has changed to 83). This should now be stable for demo purposes! mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> [email protected]<mailto:[email protected]> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 ________________________________ From: [email protected] <[email protected]> on behalf of Robert Hanson <[email protected]> Sent: 27 January 2019 19:47:31 To: Jalview Development List; Geoffrey Barton (Staff) Subject: Re: [Jalview-dev] JalviewJS demonstration build I checked, and the build server is fine. I forgot that, of course, it's not a cross-domain call to get files from the host server. Duh. On Sun, Jan 27, 2019 at 1:42 PM Robert Hanson <[email protected]<mailto:[email protected]>> wrote: Forbidden Unable to access this resource. The maximum number of failed login attempts may have been reached. Please log into the web application through the web interface to reset the number of failed login attempts. Go to... * Site homepage<https://builds.jalview.org/> That was harsh. A single login error! Now what? By the way, we need to ensure that the build server is listed in the set of "known" direct-serving servers. I wonder if I should be doing that automatically. Maybe try once at least and see if there is a problem? As I recall, though, the problem with that idea is that some servers just respond with "404 file not found" rather than a meaningful message like "Sorry, direct ajax connections are not allowed on this server." . It really slows things down to have my St. Olaf proxy serving everything. Also, let's make sure we have a good core_Jalview.z.js for anything that goes to referees so that loading is not slowed down for them. Or is it too late for that? Bob On Wed, Jan 23, 2019 at 9:10 AM Mungo Carstairs (Staff) <[email protected]<mailto:[email protected]>> wrote: I have made a new branch, intended to be stable for demo purposes, which can be run from: https://builds.jalview.org/artifact/JB-JB81/shared/build-latest/jalview-js-site/jalview_bin_JalviewJS.html This is pre-configured to load our example alignment uniref50.fa with exampleFeatures.txt (for a blank canvas, omit the last JS). It can be reached externally (I tested via my phone's 4G). (Jim: I unchecked 'Clean up plan branch automatically' to avoid it being deleted for inactivity. Delete manually when no longer required.) I want to push one more update before 'freezing' this version: currently popup menus don't work, and these are needed in various places (show structure, create feature on selection, etc etc). I'm hoping Bob will have this fixed and pushed shortly. Meanwhile plenty of stuff should work: calculate tree or PCA, adjust colour scheme or feature colouring, colour by annotation, Fetch from Uniprot etc. As a development build, this is not optimised for production: initial load of screens is slow (faster thereafter), and there is a lot of debug logging. Any questions please ask! Mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> [email protected]<mailto:[email protected]> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 The University of Dundee is a registered Scottish Charity, No: SC015096 _______________________________________________ Jalview-dev mailing list [email protected]<mailto:[email protected]> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 The University of Dundee is a registered Scottish Charity, No: SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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