This announcement from Ensembl http://www.ensembl.info/2019/04/09/ensembl-96-and-ensembl-genomes-43-are-out/
includes the merger of these REST service endpoints. This states that rest.ensemblgenomes.org has been retired, although as of today it is still responding. Before it is retired (i.e. now), Jalview users need to be advised to add this line to their .jalview_properties file in order to fetch 'EnsemblGenomes' accessions: ENSEMBL_GENOMES_BASEURL=https://rest.ensembl.org Jalview should then be 'tidied up' (code and documentation) to better reflect the merger of these services, however this is not urgent given the above workaround. Issue is JAL-3193<https://issues.jalview.org/browse/JAL-3193>. Mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> [email protected]<mailto:[email protected]> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 ________________________________ From: Announce <[email protected]> on behalf of [email protected] <[email protected]> Sent: 10 April 2019 12:00 To: [email protected] Subject: Announce Digest, Vol 1, Issue 1 Send Announce mailing list submissions to [email protected] To subscribe or unsubscribe via the World Wide Web, visit http://mail.ensembl.org/mailman/listinfo/announce_ensembl.org or, via email, send a message with subject or body 'help' to [email protected] You can reach the person managing the list at [email protected] When replying, please edit your Subject line so it is more specific than "Re: Contents of Announce digest..." Today's Topics: 1. Ensembl 96 and Ensembl Genomes 43 are out! (Astrid Gall) ---------------------------------------------------------------------- Message: 1 Date: Tue, 09 Apr 2019 13:01:18 +0100 From: Astrid Gall <[email protected]> To: <[email protected]>, <[email protected]>, <[email protected]> Subject: [ensembl-announce] Ensembl 96 and Ensembl Genomes 43 are out! Message-ID: <[email protected]> Content-Type: text/plain; charset="utf-8" Dear all We are pleased to announce that the latest Ensembl and Ensembl Genomes updates have been released: http://www.ensembl.org/ http://ensemblgenomes.org Highlights of this release include: First-pass full annotation of the mouse genome (GENCODE M21 gene set) Release of Ensembl-RefSeq MANE Select v0.5 transcripts Update to GENCODE 30 for human Joint REST server for Ensembl and Ensembl Genomes Changes to FTP directory layout New genomes: 19 birds, five reptiles and 12 mammals New interface for configuration of regulation tracks The release blog post with all news can be viewed here: http://www.ensembl.info/2019/04/09/ensembl-96-and-ensembl-genomes-43-are-out/ For the latest news from the Ensembl project visit our blog at: http://www.ensembl.info The release webinar is planned for Wednesday 17th April 2019 at 16:00 BST. Please register using the following URL: https://attendee.gototraining.com/r/8260823671959775489 Registration is free. Best regards, Astrid On behalf of the Ensembl team -- Dr Astrid Gall Ensembl Outreach Officer European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI) Wellcome Genome Campus Hinxton, Cambridge CB10 1SD United Kingdom -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://mail.ensembl.org/pipermail/announce_ensembl.org/attachments/20190409/ffde9d62/attachment-0001.html> ------------------------------ Subject: Digest Footer _______________________________________________ Announce mailing list [email protected] http://mail.ensembl.org/mailman/listinfo/announce_ensembl.org ------------------------------ End of Announce Digest, Vol 1, Issue 1 ************************************** The University of Dundee is a registered Scottish Charity, No: SC015096
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