It would be nice to have NHX capabilities, so we can annotate the various nodes and work with arbitrary length names.
-David David M. Goodstein, Ph.D. Joint Genome Institute / Lawrence Berkeley National Lab Center for Integrative Genomics / UCBerkeley http://www.phytozome.net On 12 Sep 2011, at 10:51, Jim Procter wrote: > On 12/09/2011 18:13, Joni Fazo wrote: >> Hi Jim, >> >> Great! I will start working on the Tree Puzzle web service in a >> couple of weeks. I would be happy to share my work and would >> definitely welcome assistance from yourself and Peter. I need to wrap >> some other tasks up before I can turn to the web service development. > > Excellent news! > > I'll shortly add you to the jalview development mailing list, and once > you've registered at issues.jalview.org, I'll set you up with commit > rights to the git repository. > > Adding in a phylogeny service interface should be reasonably > straight-forward from Jalview's side, providing the JABAWS interface > returns a standard newick tree file. (If you need anything more > complex... e.g. parsing of NHX format files or working with phyloXML, > then the phylogeny parser in jalview may need an upgrade). > > Jim. > > _______________________________________________ > Jalview-discuss mailing list > [email protected] > http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
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