Hi, When Jalview is already running, is it possible to open files in Jalview from the command line?
I have a bunch of multiple alignments I'd like to look at in Jalview, and rather than opening them through the GUI, I'd like to be able to do it from the command line. Using the command-line invocation given in the FAQ, I can open alignment files like so: $ java -Djava.ext.dirs=/Applications/Jalview/lib -cp /Applications/Jalview/jalview.jar jalview.bin.Jalview -open test.aln but doing this fires up a new Jalview instance each time. Thanks, Dave
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