Hello Carville. Sorry to hear that 2.7 is causing you problems!
On 30/09/2011 11:35, Carville G. Bevans III, Ph.D. wrote:
It's been a few years since I last wrote you concerning a Jalview
problem. Today I downloaded the latest Jalview 2.7, but was
dissappointed to find out that under the WebService pulldown menu,
under Alignment, that the web server alignment services are no longer
there (Muscle, MAFFT, ClustalW, ClustalW Realign were in version 2.6).
Hmm. That suggests there's a problem with your JABAWS network
configuration (which would normally result in a dialog box popping up
telling you there was a problem) - or you simply have JABAWS services
disabled in your web services preferences.
Try going to the Jalview user preferences, and find the 'web services'
configuration tab. Check that the 'enable JABAWS services' checkbox is
ticked, and then click on either 'reset services' or 'refresh services'.
If everything has worked, then you should see the aligment submenu
appear the next time you open the web services menu (check this after
pressing 'refresh services' without closing the preference dialog box).
if the above doesn't work, then you'll need to send me the output from
the Jalview java console. Do this by ticking the 'jalview java console'
option in the tools menu, then close and restart Jalview.
Jim.
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