Hi , Here is what I did. 1) Aligned two sequences using Clustaw : sequence 1 corresponding to a pdb-id and sequence-2 a closely related (60% sequence identity) with no structure. 2) In Jalview I opened the aligned seuqence file , right clicked sequence-2 and then associated it with the PDB id for the sequence 1 3) Now displaying the pdb and coloring by sequence..colors all the dissimilar parts in white and conserved sequence in lilac.
My Questions are Is there a way to export the color code as a new pdb-file with the color as a b-factor record? I tried clipping the JMOL view using CTRL-SHIFT and click-drag-up-down as suggested in the help. But the clipping pane didnt move. How do I manipulate the clipping panes in JMOL Thanks for your help Hari _______________________________________________ Jalview-discuss mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
