On 07/02/2012 14:30, Jessie Richer wrote:
Hi.. I managed to figure it out.. had to shut down jalview and restart
the computer and then the colour worked again..
Now I am waiting on the sequences to align.. has said "queuing" for
the last hour or so on 3 separate sets of sequences.. I had this same
problem last week and it turned out there was a problem with the
server or something? they did eventually finish (5 hours later)..
hoping it doesnt take that long today...
I do remember your email - but I don't think you ever replied to my
email about using a different way of starting Jalview. If you are
aligning very long sequences, you should really start Jalview with more
memory. You can find out how much you have or have left by selecting the
'Show memory usage' option under the tools menu. If you have less than
50 percent when your alignment comes back from the server, I would
recommend increasing the memory allocated to jalview.
Jim.
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