That is a lot of sequences, how long are they?
Geoff.
On 06/03/2012 16:19, Jessie Richer wrote:
Hi
Its DNA sequences and not sure exactly how many.. I'd guess around 700
I started it this morning at 8 am. It is now 1120 and it still says
queuing.
Sent on the TELUS Mobility network with BlackBerry
------------------------------------------------------------------------
*From: *Geoff Barton <[email protected]>
*Date: *Tue, 6 Mar 2012 16:05:02 +0000
*To: *Jessie Richer<[email protected]>
*Subject: *Re: [Jalview-discuss] help - one file keeps saying queuing
or job error
This is odd, the server seems fine and gives almost instantaneous
turn-around at the moment.
Are you sending very large problems?
How many sequences are you trying to align, how long are they and are
they DNA/RNA or Protein?
Geoff.
On 06/03/2012 13:00, Jessie Richer wrote:
Hello.
I have been trying to run a file to align the sequences using clustal
w/ defaults. I get one of two things, either it stays on 'queuing'
for days, or its starts 'running' and then says job error.
my file size is 1007 KB
I cant increase the virtual memory since I am using my universities
computers and do not have permission to access the program files.
All my sequences are in Capital letters (my first file has small
letters in some sequences so i fixed this but am still having the
same problem)
Any suggestions? I have run some files that were larger without any
problem - minus they took 5-6 hours to complete.
If i need to send the file, it has to be kept confidential (as per my
supervisor/professor's request since this is a research project and
he has said "data is confidential")
Jessica
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--
Geoff Barton, Professor of Bioinformatics, College of Life Sciences
University of Dundee, Scotland, [email protected]
Tel:+44 1382 385860/388731 (Fax:385764)www.compbio.dundee.ac.uk
The University of Dundee is registered Scottish charity: No.SC015096
--
Geoff Barton, Professor of Bioinformatics, College of Life Sciences
University of Dundee, Scotland, UK. [email protected]
Tel:+44 1382 385860/388731 (Fax:385764) www.compbio.dundee.ac.uk
The University of Dundee is registered Scottish charity: No.SC015096
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