Dear Andrew,
I'm glad you are finding jalview useful in your studies. I'm not sure
which particular site you are referring to when you say the Jalview
applet embedded in T-Coffee. Jalview is used on many sites as an applet
including alignment methods at EBI and elsewhere. If you join and reply
to the [email protected] mailing list then someone should be
able to help you more.
Kind regards,
Geoff
On 09/03/2012 17:30, Andrew Gerwin wrote:
Hello,
I have a question pertaining to the applet version of JalView that is
embedded in T-Coffee. I am a high school co-op student working in the
University of Guelph's Molecular and Cellular Biology department with
the promoter sequences of CBF genes in grape plants. Recently I
discovered JalView as part of T-Coffee and I was intrigued with the
vast number of features at my disposal. Currently, I am primarily
interested in the applet version (JalViewLite) but I may soon, with
approval from my professor, choose to download and use the full
version. Which of the four links under the applet category on the
JalView site will direct me to the same JalView applet that T-Coffee
exports to? Additionally, once loaded, what steps can be taken to
completely clear all the data in the applet so that the alignment
results of T-Coffee and/or Genomatix DiAlign may display in a similar
way as when T-Coffee exports the data directly to the applet? Thanks
for your help.
Sincerely,
Andrew Gerwin
--
Geoff Barton, Professor of Bioinformatics, College of Life Sciences
University of Dundee, Scotland, UK. [email protected]
Tel:+44 1382 385860/388731 (Fax:385764) www.compbio.dundee.ac.uk
The University of Dundee is registered Scottish charity: No.SC015096
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