Dear Gershon,

On 13/03/2012 12:25, Gershon Celniker wrote:
I wish to add a new option to Jalview here it is: selection the node on the tree window that causes selection of the sequence on the alignment window. my MSA file consists of ancestral sequences for each node on the tree i will this sequence to be selected once the node is selected.
Ah - this is something that used to be possible, since I put together an ancestral sequences demo for the VAMSAS system, where internal nodes could be linked to inferred sequences.

There are a couple of ways we could do this. Could you send me an example of an alignment with reconstructed sequences and a tree with internal node names so I can work out what might be the easiest one ?
Jim.

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