The full PDF of the AMAS paper (and our other early papers) is here: http://www.compbio.dundee.ac.uk/ftp/pdf/Protein_sequence_alignments_a_strategy_for_the_hierarchical_analysis_of_residue_conservation_1993.pdf
Geoff. From: [email protected] [mailto:[email protected]] On Behalf Of Jim Procter Sent: 24 May 2012 12:04 To: Palmer, Brendan Cc: [email protected] Subject: Re: [Jalview-discuss] Amino acid conservation Hi Brendan. On 24/05/2012 11:00, Palmer, Brendan wrote: Thanks for the immediate response. :) I did look at the documentation but unfortunately I could not access the AMAS paper. It just seemed odd that when I hold my mouse pointer over the individual positions on the graphical output 10 and 11 appear, despite + and * being displayed on the X-axis. ah - yes - well spotted. I've logged this in our bug tracker (http://issues.jalview.org/browse/JAL-1107) and documentation is now fixed in the next release. If you're interested, you can see a version of the AMAS paper here: http://www.compbio.dundee.ac.uk/papers/amas/amas3d.html Jim. The University of Dundee is a registered Scottish Charity, No: SC015096
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