Hello all!

On 25/06/2012 09:33, Geoff Barton wrote:
> Do you think this is a bounding box problem?  He says it is 
> reproducible with eps output.
Hmm. It may well be - but I'm not sure where the bounding box problem is 
actually occurring.

With an EPS file embedded in PPT, Arnaud, the problem you are seeing may 
be because EPS includes a PNG image which may well be truncated due to 
the same bug. EPS files, however, are rendered in a slightly different 
way, and will include the complete text shape if you select the 'Text' 
output option. Try opening the file in InkScape, if you don't have 
access to Illustrator, and you should see the full consensus line.

Unfortunately, I can't reproduce this on my own system. The EPS 
(text/lines) and PNG files exported from a wrapped view of the default 
alignment all look fine when imported into Adobe Illustrator 
(development branch of Jalview (Build Date: 15 June 2012), Java version: 
1.6.0_33 x86_64 Mac OS X 10.6.8).  You can try this version yourself from :
http://www.compbio.dundee.ac.uk/user/ws-dev1/jalview/develop/webstart/jalview.jnlp

If you still have the same problems, Could you send me the output of the 
Jalview Java console (open this from the Desktop's Tools menu) ?  It 
would also help if you could send an example PNG, EPS and jalview 
project that reproduces the problem.

Jim.

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