On Mon Jun 25 16:47:40 2012, [email protected] wrote:
> Dear Jim,
>
> Many thanks for spending for that.
> I've updated Java with the latest available version; as you can see in
> the console output,
> and used the Development Branch Build.
> Results remains the same as you can see there:
> http://issues.jalview.org/browse/JAL-1128-> testCH.png
OK - I'll move the discussion to the list, but for those other 
jalview-discuss folk listening, I'll say here that the EPS file Arnaud 
provided confirmed my growing suspicion that this is a font issue. The 
EPS file was definitely using a font that I don't have on my system 
(the logo wasn't rendered correctly at all), which explains why I 
couldn't reproduce the problem.

The quickest work around is probably to pick another font to render the 
alignment, and repeat until you don't see the issue. If you have the 
same problem with several fonts picked at random, then we'll have to 
dig deeper.

Jim.
(see http://issues.jalview.org/browse/JAL-1128 for next comments...).
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